Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq400 96.9 2e-15 >seq400 Length=416305 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || || ||||||||||||| ||| | || ||||| ||||||||||||||| Sbjct 399746 TCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAA 399687 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| ||||| || | | |||||| || ||||| ||| | || Sbjct 399686 ATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACATTA 399627 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | || || || || | |||||||| || |||||||| || || || Sbjct 399626 TCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACG 399567 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 399566 AAGATTTGCAT 399556 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| ||| ||||| || || || || |||||||| ||| Sbjct 400011 TCCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCT 399952 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||| |||||||| |||||||| | ||||| || || || Sbjct 399951 GAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGG 399892 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || |||||| ||| | || | || | || | || || || Sbjct 399891 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCAC 399832 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || ||||| || | || || |||||||||||||| Sbjct 399831 TTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069917094240