Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq76 269 2e-67 seq101 105 6e-18 >seq76 Length=131010 Score = 269 bits (298), Expect = 2e-67 Identities = 639/955 (67%), Gaps = 8/955 (1%) Strand=Plus/Plus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTAC 23084 ||| || | |||||| || ||||| ||| || || |||||| ||||| || || | Sbjct 91009 CGACGCCAAATTGCAACAAGCGACCTCATCTGGTGCACA-GTACTCGACAATCTCAGTGC 91067 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | | ||| | || || || | ||| | |||||||| ||||| ||||| | || Sbjct 91068 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCAT 91127 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||||| |||||| | || | || ||||| || | ||| | || | ||| | Sbjct 91128 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGAATAGAGTACCAAA 91187 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | || || | | | || || ||| ||| || |||||| || | |||||| Sbjct 91188 GCTTTTGGGCTTTGATGC-TCTTGCGACCCTTGCCCTCAGACTCGTATTTCTCATACAAC 91246 Query 23264 GCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || || || ||| ||||||| ||| ||||||| || || | | | || ||||| | Sbjct 91247 GCTTCGAACTCGTCACCGTAGACA-TCGGCCAAACCAGGACACTCGTTAGGGCACATCAA 91305 Query 23323 ACTCCACATTGAG-TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 |||| | ||| | |||||||| || |||| || ||||| || ||||| ||||||| Sbjct 91306 TGTCCAG-TCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGT 91364 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 | || || || ||||| || |||||||| || ||| ||||||| | || | || | Sbjct 91365 AAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACT 91424 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || || || || ||||| ||||| ||||| | ||| || || || || | ||| || | Sbjct 91425 CGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTAC 91484 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | || ||||| || || | ||| |||||||| | ||||| ||||| || |||| |||| Sbjct 91485 CACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGCATAGGAACGATTCCGT 91544 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 |||| ||| || || | | | ||| | || || | ||||||||| || Sbjct 91545 TGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGGATTCTGTGAACGTTGA 91604 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| || || || | || || ||||| || || |||| |||||||| || | Sbjct 91605 GACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAATGTGTCGTAAATAC 91664 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 | || ||||||||||| || | ||| || ||| || || || | ||| || | || | Sbjct 91665 CATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATGAAAGTTGTGCCTGTGGTG 91724 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 || | || | ||| || || ||| |||||| || |||||| | ||||| | |||| Sbjct 91725 TACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGT 91784 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || |||||||| || || || ||||| |||||||| || | || || ||||| |||| Sbjct 91785 AGGTCTCGATGGCAGCCTCGATATCCTCACCGTGTATTCCCACCGCAACACGCATAATCA 91844 Query 23862 TGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCG 23921 | | ||| || | |||| | ||| | | || |||||||| || | | | Sbjct 91845 TATGTTGTGGACGCTCGCAGATCTTGCCATCGAGACGGAGGAGATATGATCGCTCGAGGG 91904 Query 23922 TTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 | || || || || || | ||||| || ||||| |||| || ||||| || || Sbjct 91905 TCTTGAAACCGAAGTATTGGTAGTTGAAATCACGGTCGTAGACAATGGCAGAGTT 91959 >seq101 Length=586485 Score = 105 bits (116), Expect = 6e-18 Identities = 255/380 (67%), Gaps = 12/380 (3%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAG 57971 |||||||| || ||| | || |||||| || | || || |||| || ||| | Sbjct 137915 AAGAAGGCCGACTGGGCTGTCCGATGGATCCAA---GACAAGGAGTCCACCTTTGCCCAA 137971 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | || | || |||||||| || || ||||| ||||| ||| || || | || Sbjct 137972 CGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATC 138031 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| ||||||| || ||||| ||| | || || || || |||||||||||| || Sbjct 138032 TTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCC 138091 Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA- 58150 || ||||||||||| || ||||| || || ||||| | | ||| ||| ||| || | Sbjct 138092 CGTGACGAGGGTCTGCACACTGACTTCGCATGCCTTCTCTTCTCCCAC-TTG--AAGCAT 138148 Query 58151 -ACCGACGCGGGATCGCA-TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 || | || | ||| || || | | ||||||||||| || | ||| || | ||| Sbjct 138149 CGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAG 138208 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | || || || || || || | ||||| |||||| | |||||| | Sbjct 138209 TTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGATGAAGCAA 138268 Query 58269 TACATTGAGTTTGTTGCCGA 58288 ||||||||||| || || || Sbjct 138269 TACATTGAGTTCGTCGCTGA 138288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763452369680