Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq101 114 3e-20 seq115 105 1e-17 seq76 87.8 4e-12 >seq101 Length=586485 Score = 114 bits (126), Expect = 3e-20 Identities = 353/541 (65%), Gaps = 10/541 (2%) Strand=Plus/Plus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAA---CGATTTGGC 101907 |||||||||||||| | |||||| | ||||| ||| ||| | | || || Sbjct 137908 CATCAAGAAGAAGGCCGACTGGGCTGTCCGATGGATCCAAGACAAGGAGTCCACCTTTGC 137967 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 ||| |||||||||| || || ||||| || |||||||| ||||| | ||||| || Sbjct 137968 CCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTC 138027 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||| |||||| | ||||| | || | || ||||||| |||| |||||| ||||| || Sbjct 138028 CATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGAT 138087 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 || | ||||| ||||| || ||||| |||||| | || || | ||| Sbjct 138088 CTCCCGTGACGAGGGTCTGCACACTGACTTCGCATGCCTTCTCTTCTCCCA----CTTGA 138143 Query 102088 TG-AT-ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAA 102145 | || ||| | |||| | | | | | | |||| || || || ||||| Sbjct 138144 AGCATCGCCCAAGCAAG-GCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAG 138202 Query 102146 CAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATG 102205 ||||| || | || | | || ||| | | | || |||||| ||| |||||| Sbjct 138203 CAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGATG 138262 Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCAC 102265 | || |||||||| || || || ||| || | || | || || ||| Sbjct 138263 AAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAAGGTT 138322 Query 102266 TATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAAC 102325 || || ||||||||||| ||| || ||||| || || || || | ||||||||| Sbjct 138323 TACAAGGTTACCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCCGGAAAGACCAAC 138382 Query 102326 TTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGCTTCTATCAATAAG 102385 || ||||||||| | ||||| || || ||| ||| ||||||||| || | | ||| Sbjct 138383 TTCTTTGAAAAGCGTGTCGCTGATTACCAAAAGGCCGGTGTCATGGCTGGTACCCAAAAG 138442 Query 102386 A 102386 | Sbjct 138443 A 138443 >seq115 Length=100520 Score = 105 bits (116), Expect = 1e-17 Identities = 204/298 (68%), Gaps = 10/298 (3%) Strand=Plus/Plus Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386 ||| | |||||| ||| || || ||||| |||| | || ||| ||| | | | | Sbjct 9109 ATAAAAATCTGGGACGGAAACGGATCGCGAGAATACCTCGATAGTGTAGGCCTTTCCCAC 9168 Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 | |||| |||||| | || ||||| || || ||||||||||| |||||||| || ||| Sbjct 9169 CGCGCAGTTGGAGATCTAGGTCCCGTCTATGGCTTCCAATGGCGACATTTTGGGGCCGAA 9228 Query 35447 TAT---GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATA 35503 ||| ||| || | |||||||| || ||||| | ||||| || ||| | Sbjct 9229 TATGTGGATGCC---GAAACGGATTATACAGGCAAGGGAGTCGATCAGTT--ACAAGAGG 9283 Query 35504 CTAAAGAC--CCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATC 35561 || ||| |||| | ||||| ||||| || |||| ||| ||| || ||||||| Sbjct 9284 TTATTGACAAGTTGAGGAATAATCCGTATGATCGACGGATTATTTTGAGTGCGTGGAATC 9343 Query 35562 CTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | | ||| | | ||||||||| | || || || || ||| ||| || |||||||| Sbjct 9344 CGAGAGATTTGAAACTTATGGCTTTACCGCCTTGTCATATGTTTGCGCAGTTTTATGT 9401 >seq76 Length=131010 Score = 87.8 bits (96), Expect = 4e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| || || |||| || ||||| |||| || || || || ||| | || Sbjct 91595 TGAACGTTGAGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAATGTG 91654 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 || |||||||| |||||||| || || | | | | | |||||||| || |||||||| Sbjct 91655 TCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATGAAAGTTGT 91714 Query 94894 GG-TGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 | |||| ||| ||| || || |||||||| || ||||| || || | || || Sbjct 91715 GCCTGTGG-TGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGA 91773 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012 ||| | | || || || ||| ||| | ||| || ||||| || || || || || Sbjct 91774 CATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGTATTCCCACCGCAAC 91833 Query 95013 ACGCATAATCATGTCCTGAGGGCGCTC 95039 |||||||||||| | || || ||||| Sbjct 91834 ACGCATAATCATATGTTGTGGACGCTC 91860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577292785195