Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq76 297 2e-75 seq101 105 8e-18 >seq76 Length=131010 Score = 297 bits (328), Expect = 2e-75 Identities = 1147/1778 (65%), Gaps = 51/1778 (3%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 90098 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 90157 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164 || | |||| || ||||||||||| || | || || | || || | || Sbjct 90158 CCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 90216 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 90217 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 90276 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 ||| || ||||| || ||||||| || || |||| ||| ||||| |||| | Sbjct 90277 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 90336 Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 ||||| | || || || ||||||||||| | || || | ||||| || | || Sbjct 90337 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 90396 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | | | ||| | | | | || || ||||| || |||||||||||||| Sbjct 90397 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 90456 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 || | || | |||| ||| || || |||||| || || | |||| || ||| Sbjct 90457 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAATCC 90516 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 90517 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 90576 Query 62522 GTATGTTCTGATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 || | ||| | | ||| || | |||||| ||||||||| | ||| ||| Sbjct 90577 GTGTTGAGCGATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTGACAC 90635 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640 |||||| || || ||| ||| ||| ||| |||||| ||||||| Sbjct 90636 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATG 90695 Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTC-------GCCTCTAATGCACCGTAATAAATG 62693 | || | ||| || |||||| || || ||| ||| |||||| Sbjct 90696 GACCATGAATCTTTGC-------CAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATG 90748 Query 62694 GTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAA 62752 || || || || | | || || | |||| || || || ||||| ||| | || Sbjct 90749 GTCTCGAAAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGAAGACG-AA 90806 Query 62753 GAGAATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811 ||| | || || || || | ||||||||||| | | | |||||||| || | || Sbjct 90807 GAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAAT 90866 Query 62812 TAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 | | |||| || || |||| || || || || | ||| ||||| || || | || Sbjct 90867 T-GCTCTTTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTC 90925 Query 62871 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--CATCTAT 62926 |||| | |||| | || || | || || | |||||| | | || | ||| Sbjct 90926 TTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCG 90985 Query 62927 TACAAACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 | | | ||||| | |||| || |||| ||| || || ||||||| | | | Sbjct 90986 TCGACATATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGG-TGC 91044 Query 62985 GCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043 || || | | ||||||||||| | || | ||| || || | ||| | ||| Sbjct 91045 ACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTG 91104 Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 || |||||| ||| || |||||||| ||||| ||||| || | || || ||| | || Sbjct 91105 GTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTG 91164 Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTC 63163 || || | ||| | | ||| | | | || || || | ||| | |||| | Sbjct 91165 AGCCTCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGC 91220 Query 63164 TCTT----TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63219 || |||||| |||||| |||||||||||| || | |||| | |||| | Sbjct 91221 CCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAAC 91280 Query 63220 TAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63279 |||||| || | || |||||||| | ||| || || | | || || ||||| | Sbjct 91281 CAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGA 91340 Query 63280 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 ||||||| |||||||| ||||| ||| ||||| | | | | ||||| ||||| Sbjct 91341 AGAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGT 91400 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 |||||| || ||||||||| | | || ||| | ||||| || || | ||| |||| Sbjct 91401 GGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGG 91460 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | | | ||||| || ||||| || || ||||| | ||||| |||||||| ||| ||| Sbjct 91461 CGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAA 91520 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 |||| | ||| |||| || ||||| || | || |||||||||| ||||| | ||| Sbjct 91521 CTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAG 91580 Query 63520 TGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 | ||||| || | || ||| ||||| || || || || | || || || | || Sbjct 91581 TAGCACGGATTCTGTGAACGTTG--AGACCGATACCACCAGCGTTCTTTGAAATCATAGC 91638 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 || || || ||||| || || || || ||||| || || |||||| | || || Sbjct 91639 ACAAATCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAA 91698 Query 63638 ACAGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 ||| || | || ||| | | | || || || || | ||| || || ||||| | Sbjct 91699 GCAGGATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGG 91757 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGA 63755 | || |||| || | | ||||| ||||| || || | || |||||| || | Sbjct 91758 TGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG- 91816 Query 63756 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || ||||| || || |||||||| | ||| || || || Sbjct 91817 TGTATTCCCACCGCAACACGCATAATCATATGTTGTGG 91854 >seq101 Length=586485 Score = 105 bits (116), Expect = 8e-18 Identities = 331/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| | ||||| ||||| || || || || ||||| | | || || || Sbjct 138414 TTTTGGTAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 138355 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| || || || || |||||||| ||||||| || | | || | | | Sbjct 138354 TCCATAAAGTCGAATGGGTTGGTAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGG 138295 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | ||| |||||||| || || ||| ||||||| | ||||| || | || Sbjct 138294 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA 138235 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 | ||||||||| |||| | || ||||| ||||| || || | || || | Sbjct 138234 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 138175 Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590 || | | | | || || |||| || || || | | |||||||| Sbjct 138174 GCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAAG 138115 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 || ||||||||||||||| | || || ||||| || || || || || | ||| Sbjct 138114 TCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATG 138055 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 ||||||||||| || | ||| || ||||| ||||| || || |||||||| || || Sbjct 138054 AGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCA 137995 Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTT 33767 || || || ||||||| ||| | | || | || | |||| || ||||| Sbjct 137994 ACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGGATCCATCGG 137935 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 33799 |||||| ||||||||||| || | ||||| Sbjct 137934 ACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 137903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813435331120