Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq76 87.8 2e-12 >seq76 Length=131010 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/270 (68%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 || || ||||| | ||| ||||||||||| || | || || | | || || || | Sbjct 91418 AGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGC 91477 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 || | ||| || |||| || |||||| | ||||| ||| | | ||| | |||||| || Sbjct 91478 TTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGCATAGGAACG 91537 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTT 38286 || || || || || ||||| |||||| ||||||| ||| |||| || || | | Sbjct 91538 ATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGGAT-TCTGTG 91596 Query 38287 ATCG-ACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATC 38345 | || | || || ||||| || | ||||| || | ||| || || || || || Sbjct 91597 AACGTTGAGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAATGTGTC 91656 Query 38346 AAATATACCTTCTATACTGTCATCCTTTAT 38375 | ||||| || || ||||| ||||| || Sbjct 91657 GTAAATACCATCAATGCTGTCCTCCTTCAT 91686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521701879760