Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq76 275 8e-69 seq101 111 2e-19 >seq76 Length=131010 Score = 275 bits (304), Expect = 8e-69 Identities = 1321/2064 (64%), Gaps = 47/2064 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 90098 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 90157 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 64957 || | |||| || ||||||||||| || | || || | || || | || Sbjct 90158 CCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 90216 Query 64958 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 90217 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 90276 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 65077 ||| || ||||| || ||||||| || || |||| ||| ||||| |||| | Sbjct 90277 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 90336 Query 65078 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 ||||| | || || || ||||||||||| || || || | ||||| || | || Sbjct 90337 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 90396 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| | | | ||| | | | | || || || || || ||||| |||||||| Sbjct 90397 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 90456 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 || | || | |||| ||| || || |||||| || || | |||| || ||| Sbjct 90457 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAATCC 90516 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 90517 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 90576 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACNN 65373 || | ||| | | || | || | |||||| ||||||||| | ||| || Sbjct 90577 GTGTTGAGCGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 90635 Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 65433 ||| || || ||| ||| ||| ||| |||||| || |||| Sbjct 90636 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATG 90695 Query 65434 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 65493 | || | ||| || | || || || ||| ||| |||||||| |||| Sbjct 90696 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 90755 Query 65494 AGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 65552 | || | | || || | |||| || || | ||||| ||| | ||||| | Sbjct 90756 AAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGAAGACG-AAGAGCCAA 90813 Query 65553 -AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611 || || || || | ||||||||||| | | | |||||||| || | ||| | | Sbjct 90814 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 90872 Query 65612 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 65670 ||| || || |||| || || || || | ||| ||||| || || | || |||| | Sbjct 90873 TTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTCTTGACGA 90932 Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGC--TCATCTATTACAAAC 65726 |||| | || || | || || | |||||| | | || || ||| | | | Sbjct 90933 CAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACAT 90992 Query 65727 ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 65783 ||||| | |||| || |||| ||| ||| || ||||||| | | | || || Sbjct 90993 ATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGG-TGCACAGTAC 91051 Query 65784 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 65843 | | ||||||||||| | || | |||||| || | ||| | ||| || ||| Sbjct 91052 TCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 91111 Query 65844 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 65903 ||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| || Sbjct 91112 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 91171 Query 65904 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTT-- 65960 | ||| | | ||| | | | || || || | ||| | ||| | || Sbjct 91172 AGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCCCTCAGAC 91228 Query 65961 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACAT 66020 |||||| |||||| |||||||||||| || | |||| | |||| |||||||| Sbjct 91229 TCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACAC 91288 Query 66021 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 66080 || | || |||||||| | ||| || || | | || || ||||| |||||||| Sbjct 91289 TCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCT 91348 Query 66081 GGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 66140 |||||||| ||||| ||| | ||| | || | | ||||| ||||| |||||| Sbjct 91349 GGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTT 91408 Query 66141 TTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACT 66200 || ||||||||| | | || ||| ||||| || || | ||| ||||| | | | Sbjct 91409 CGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCA 91468 Query 66201 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 66260 ||||| || ||||| || || ||||| | ||||| |||||||| ||| ||||||| | | Sbjct 91469 CCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGC 91528 Query 66261 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGA 66320 || |||| || || ||||| | || ||||| |||| ||||| ||| | ||||| Sbjct 91529 ATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGG 91588 Query 66321 ATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 66378 || | || ||| ||||| || || || || | || || || | || || | Sbjct 91589 ATTCTGTGAACGTTG--AGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCT 91646 Query 66379 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 66438 | || || || || || || || || || || ||| |||||| | || || ||| | Sbjct 91647 TCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATG 91706 Query 66439 ACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497 | | || ||| | | || || || || | ||| || || ||||| || || || Sbjct 91707 AAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAGTAT 91765 Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 66556 || || | | ||||| ||||| || || | || |||||| || | || ||||| Sbjct 91766 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGTATTCC 91824 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 || || |||||||| | ||| || || || | || ||||||| | | | Sbjct 91825 CACCGCAACACGCATAATCATATGTTGTGGACGCTCGCAGATCTTGCCATCGAGACGGAG 91884 Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCG 66674 | || ||| || | || || ||||| || || | ||| ||||| || || ||| Sbjct 91885 GAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGGTCG 91942 Query 66675 TAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TC-CATGGTAATAC 66732 || | ||| | |||||||| | ||| | || | || ||| || ||| | | | Sbjct 91943 TAGACAATGGCAGAGTTGAGCTCGGCCTCGTGCTTCATGAC-ACAGTCGTATGTT--TGC 91999 Query 66733 TTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCC 66791 ||| || || || || |||| ||| |||||||||||||| |||| || Sbjct 92000 TTGCTGATCATGGGTGACAATTTCTTGTTTCGAGGATTGACATAGTGATATAATTCGGAA 92059 Query 66792 ATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 66850 || || | | | ||| | || || |||| |||||| || || || || || ||||| || Sbjct 92060 ATGAC-GCTCGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTCGAAACTGCAATTCTTGC 92118 Query 66851 GGCTATAATGGCATAATCCGGATG 66874 || | ||||||||||| || || Sbjct 92119 TGCGAGGATGGCATAATCGGGGTG 92142 >seq101 Length=586485 Score = 111 bits (122), Expect = 2e-19 Identities = 332/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| ||| | ||||| ||||| || || || || || || | | || || || Sbjct 138414 TTTTGGTAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 138355 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| || |||||||| ||| |||| || |||| || | | || | | | Sbjct 138354 TCCATAAAGTCGAATGGGTTGGTAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGG 138295 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| ||||| || || || ||| ||||||| | ||||| || | ||| Sbjct 138294 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA 138235 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 138234 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 138175 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | |||| | | | || || ||| | || || || | | |||||||| Sbjct 138174 GCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAAG 138115 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 138114 TCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATG 138055 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 ||||||||||| || | ||| || ||||| || || || ||| ||||| || || || Sbjct 138054 AGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCA 137995 Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTT 36343 || || || ||||||| ||| | | || | || | |||| || ||||| Sbjct 137994 ACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGGATCCATCGG 137935 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 36375 |||||| ||||||||||| || | ||||| Sbjct 137934 ACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 137903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168447832360