Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq101 93.3 3e-14 >seq101 Length=586485 Score = 93.3 bits (102), Expect = 3e-14 Identities = 285/435 (66%), Gaps = 12/435 (3%) Strand=Plus/Plus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||||| | ||||| || |||||||| || || | || ||| || || || |||| Sbjct 137971 ACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCAT 138030 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||| ||||||| ||| |||||| | || | | || |||||||||||||| Sbjct 138031 CTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTC 138090 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATG--GCA--A 22915 ||||||||| ||||| ||| |||||| || || | || || || || ||| Sbjct 138091 CCGTGACGAGGGTCTGCACACTGACTTCGCATGCCTTCTCTTCTCCCACTTGAAGCATCG 138150 Query 22916 ACAAACCGTGTCAG--GACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGAC 22973 | || | | ||| | | | || | || |||| | || || ||||| |||||| Sbjct 138151 CCCAAGCAAGGCAGCAGTCCAGGC-CGTC--ATCA---CCGAGGCTGTTGAGATTGAGCA 138204 Query 22974 GGCTTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAG 23033 | ||||| ||||| || | || || || ||||| || |||| Sbjct 138205 AGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGATGAA 138264 Query 23034 ACTGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTA 23093 | ||||| |||| || || ||||| || ||| | |||| || ||| ||| | || Sbjct 138265 GCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAAGGTTTA 138324 Query 23094 TAACGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTT 23153 || ||| |||| ||||| || || ||||| ||||| ||| || || || ||||| Sbjct 138325 CAAGGTTACCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCCGGAAAGACCAACTT 138384 Query 23154 CTTTGAACGCCGTGT 23168 ||||||| ||||| Sbjct 138385 CTTTGAAAAGCGTGT 138399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356231303295187