Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq400 95.1 1e-14 >seq400 Length=416305 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || ||||||| || ||||| || || ||||| ||||| | Sbjct 399269 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 399210 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || |||||||| || || ||| |||||| |||||| ||||| ||||| Sbjct 399209 AGAGTACGTCCA-TCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGG 399151 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| | |||||| Sbjct 399150 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCAC 399091 Query 139717 CTCAACGGTCACCGTCTTGCCGGT 139740 ||||| ||| | ||||| ||||| Sbjct 399090 CTCAAGGGTGATAGTCTTACCGGT 399067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060719776800