Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq76 327 2e-84 seq101 129 8e-25 >seq76 Length=131010 Score = 327 bits (362), Expect = 2e-84 Identities = 1340/2067 (65%), Gaps = 53/2067 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 90098 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 90157 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 78836 || | |||| || |||||||||||| || | || || | || || | || Sbjct 90158 CCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 90216 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 90217 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 90276 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 ||| || ||||| || ||||||| || || |||| ||| ||||| |||| | Sbjct 90277 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 90336 Query 78957 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 ||||| | || || || ||||||||||| || || || | ||||| || | || Sbjct 90337 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 90396 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| | | | ||| | | | | || || || || || ||||| |||||||| Sbjct 90397 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 90456 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 || | || | |||| ||| || || ||||||||| || | | || || ||| Sbjct 90457 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAATCC 90516 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | ||||||| || || ||||||||||| || || | ||||| || | | ||| Sbjct 90517 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 90576 Query 79194 GTAT-GATCTGATTTTATCTTTTAGAGATT-CCCAATCCCAAAGATCAGACGGGACAACA 79251 || | || | ||| | | || | || | |||||||||||||||| | || ||| Sbjct 90577 GTGTTGAGC-GATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACA 90634 Query 79252 TTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAA 79311 ||| | |||||||| || || ||| || || ||| ||||| ||||| Sbjct 90635 CCCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATAT 90694 Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCG 79371 || || | | | || || || || || || ||| |||||||| ||| Sbjct 90695 GGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCG 90754 Query 79372 AAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAAT 79430 ||||| | | || || | |||| || ||| | ||||| ||| | ||||| Sbjct 90755 AAAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGAAGACG-AAGAGCCA 90812 Query 79431 A-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 | || || || || | ||||||||||| | | | |||||||| || | ||| | Sbjct 90813 AGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTC 90871 Query 79490 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACT 79548 |||| || || |||| || || || || | ||| ||||| || || | ||| |||| Sbjct 90872 TTTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTCTTGACG 90931 Query 79549 ATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA-AATCGTC---CATCTATTACAAA 79604 | |||| | || || | || || | |||||| || | | | ||| | | | Sbjct 90932 ACAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACA 90991 Query 79605 CATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TA 79661 ||||| | || | || |||| ||| ||| || ||||||| | | | || || Sbjct 90992 TATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGG-TGCACAGTA 91050 Query 79662 TTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACT 79721 | | || |||||||| | ||| | ||||| || | ||| | ||| || || Sbjct 91051 CTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCT 91110 Query 79722 CTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTC 79781 |||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| || Sbjct 91111 CTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTC 91170 Query 79782 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC-TCTT- 79839 | ||| | | ||| | | | || || || | |||| | ||| | || Sbjct 91171 AAGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCCTCAGA 91227 Query 79840 -TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898 ||||||| ||| || |||||||||||| || | |||||| | || |||||||| Sbjct 91228 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 91287 Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGA 79956 |||| ||| |||||||| | ||| || | || ||| || || ||||| |||||| Sbjct 91288 CTCGTTAGGGCACATCAATGTCCA--GTCGAGGTTCTTTTCAACACGCTTCATGAAGAGA 91345 Query 79957 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 80016 || |||||||| ||||| ||| ||||| | || | | |||||| ||||| ||| Sbjct 91346 TCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 91405 Query 80017 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 80076 ||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| | | Sbjct 91406 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 91465 Query 80077 ACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 80136 | || || || ||||| || || ||||| | ||||| |||||||| ||| ||||||| Sbjct 91466 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTG 91525 Query 80137 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 | ||| |||| || || ||||| | || ||||| |||| ||||| ||| | ||| Sbjct 91526 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCA 91585 Query 80197 CGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 80254 || || | || ||| ||||| || || || || | || || || | || || Sbjct 91586 CGGATTCTGTGAACGTTG--AGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAA 91643 Query 80255 GTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGC 80314 || || || || || || || || ||||| || || |||||| | || || ||| Sbjct 91644 TCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGG 91703 Query 80315 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || | || ||| | | || || || || | ||| || || ||||| || || Sbjct 91704 ATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAG 91762 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAAT 80432 |||| |||| | ||||| ||||| || || | || |||||| || | || || Sbjct 91763 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGTAT 91821 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 ||| ||||| |||||||| | ||| || || || | || ||||||| || | Sbjct 91822 TCCCACCGCAACACGCATAATCATATGTTGTGGACGCTCGCAGATCTTGCCATCGAGACG 91881 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 80550 | | || ||| || | || || ||||| || || | ||| ||||| || || Sbjct 91882 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGG 91939 Query 80551 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TC-CATGGTGA 80608 ||||| | ||| | |||||||| | ||| | || | || ||| || ||| | Sbjct 91940 TCGTAGACAATGGCAGAGTTGAGCTCGGCCTCGTGCTTCATGAC-ACAGTCGTATGTT-- 91996 Query 80609 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 80667 | |||| || || || || |||| ||| |||||| ||||||| |||| || Sbjct 91997 TGCTTGCTGATCATGGGTGACAATTTCTTGTTTCGAGGATTGACATAGTGATATAATTCG 92056 Query 80668 TCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 80726 || || | | | ||| | || || |||| ||||| || || || || || ||||| Sbjct 92057 GAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTCGAAACTGCAATTCT 92115 Query 80727 GGCGGCTAAAATGGCATAATCTGGATG 80753 || || | ||||||||||| || || Sbjct 92116 TGCTGCGAGGATGGCATAATCGGGGTG 92142 >seq101 Length=586485 Score = 129 bits (142), Expect = 8e-25 Identities = 336/512 (66%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||| | ||||| ||||| || || || || ||||| | | || || || Sbjct 138414 TTTTGGTAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 138355 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| || || || || |||||||| || |||| || | | || | | | Sbjct 138354 TCCATAAAGTCGAATGGGTTGGTAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGG 138295 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | ||| ||||| || || || ||| ||||||| | ||||| || | ||| Sbjct 138294 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA 138235 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 138234 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 138175 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968 | || | | | | || || ||||| || || || | | |||||||| Sbjct 138174 GCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAAG 138115 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || ||||||||||||||| | || | |||||||| || || || || | ||| Sbjct 138114 TCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATG 138055 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088 ||||||||||| || | ||| || ||||| || || || ||| |||||||| || || Sbjct 138054 AGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCA 137995 Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTT 50145 || ||||| ||||||||||| | | || | ||| | |||| || ||||| Sbjct 137994 ACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGGATCCATCGG 137935 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 |||||| ||||||||||| || | ||||| Sbjct 137934 ACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 137903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264050447560