Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq400 125 5e-24 >seq400 Length=416305 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| || | ||||||||||||||| | ||||||||| Sbjct 400010 CCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 399951 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||||||| |||||||| |||||||||||||||||||| | || Sbjct 399950 AGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGA 399891 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || |||| ||||| | ||| |||||| || ||| || Sbjct 399890 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACT 399831 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || || || | || || ||||| || ||||| Sbjct 399830 TCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367141238682