Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq76 241 2e-58 seq101 114 2e-20 >seq76 Length=131010 Score = 241 bits (266), Expect = 2e-58 Identities = 1140/1789 (64%), Gaps = 41/1789 (2%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || |||||||| | || || || | ||||| ||||||||||| || || || ||| Sbjct 90098 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 90157 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || | |||| || ||||||||||| || | || | | || || ||| Sbjct 90158 CCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 90217 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || ||||| || ||| |||||| ||||| || || | ||| |||||||| | | | Sbjct 90218 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 90277 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || ||||| || ||||||| || || |||| ||| ||||| |||| | | Sbjct 90278 ATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATG 90337 Query 71041 TTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 |||| | || || || ||||||||||| ||||| || | || || || | || | Sbjct 90338 TTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGAC 90397 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | | ||| | | | | || || || || || ||||| ||||||||| Sbjct 90398 CAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCCA 90457 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | | || | |||| ||| || || |||||| || || | |||| || ||| Sbjct 90458 GCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAATCCA 90517 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277 | ||||||| || || || |||||||| || || | | ||| || | | ||| Sbjct 90518 AGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCG 90577 Query 71278 TGT-GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 ||| || || | | ||| || | |||||| ||||||||| | ||| || Sbjct 90578 TGTTGAGCGATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTGACACC 90636 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396 ||| ||| || || ||| |||||| || ||||| Sbjct 90637 CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATGG 90696 Query 71397 TCCTTCTTT-TTCGGCTAGTTCAC--AACTCGCCTCTAATGCTCCATAATAAATGGTTTC 71453 || | | || | | | | || || | | || || | | |||||||| || Sbjct 90697 ACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTCTC 90753 Query 71454 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAA 71512 |||||| | | || || | |||| || || || ||||| ||| | ||||| Sbjct 90754 GAAAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGAAGACG-AAGAGCC 90811 Query 71513 TA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 | || || || || | |||||||| || | | | ||||||||||| | ||| | Sbjct 90812 AAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCT 90870 Query 71572 ATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 |||| || || |||| || || || || | ||| ||||| || || | || |||| Sbjct 90871 CTTTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTCTTGAC 90930 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA----TCTATTACAA 71686 | |||| | || || | || || | |||||| | | || ||| | | Sbjct 90931 GACAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGAC 90990 Query 71687 ACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 | | ||| || |||| || |||| ||| ||| || ||||||| | | || Sbjct 90991 ATATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGGTGCACAGTA 91050 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 | | ||| |||||||| | || | |||||| || | ||| | ||| || || Sbjct 91051 CTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCT 91110 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 |||| ||| || |||||||| ||||| || || || | || || ||| | |||| || Sbjct 91111 CTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTC 91170 Query 71865 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC-TCTT- 71922 | ||| | | ||| | | | || || || | |||| | ||| | || Sbjct 91171 AAGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCCTCAGA 91227 Query 71923 -TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 ||||||| ||| || |||||||||||| || | ||| | | || |||||||| Sbjct 91228 CTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACA 91287 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039 || || || |||||||||| ||| || | || ||| || || ||||| |||||| Sbjct 91288 CTCGTTAGGGCACATCAATGTCCA--GTCGAGGTTCTTTTCAACACGCTTCATGAAGAGA 91345 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 || |||||||| ||||| ||| ||||| | || | | |||||| ||||| ||| Sbjct 91346 TCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 91405 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 ||| || ||||||||| | | || ||| | ||||| || || | ||| ||||| | | Sbjct 91406 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 91465 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || || ||||| | ||||| |||||||| ||| ||||||| Sbjct 91466 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTG 91525 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| || || ||||| || ||||| |||| ||||| ||| | ||| Sbjct 91526 AGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCA 91585 Query 72280 CGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || || || || ||| ||||| || || || || | || || || | || || Sbjct 91586 CGGATTCTGTGAACGTTG--AGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAA 91643 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 || || || || || || || || || || || ||| |||||| | || || ||| Sbjct 91644 TCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGG 91703 Query 72398 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || | || ||| | | || || || || | ||| || || ||||| || || Sbjct 91704 ATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAG 91762 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTAT 72515 |||| |||| | ||||| ||||| || || | || |||||| || | ||||| Sbjct 91763 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGTAT 91821 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 ||| ||||| |||||||| | |||||| || || | || ||||||| Sbjct 91822 TCCCACCGCAACACGCATAATCATATGTTGTGGACGCTCGCAGATCTTG 91870 >seq101 Length=586485 Score = 114 bits (126), Expect = 2e-20 Identities = 333/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||| | ||||| ||||| || || || |||||||| | | || || || Sbjct 138414 TTTTGGTAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 138355 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| || || || || |||||||| || |||| || | | || | | | Sbjct 138354 TCCATAAAGTCGAATGGGTTGGTAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGG 138295 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| |||| ||| || || ||| ||||||| | ||||| || | ||| Sbjct 138294 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA 138235 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 138234 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 138175 Query 42014 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 | |||| | | | || || ||| | || || || | | |||||||| Sbjct 138174 GCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAAG 138115 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || |||||||||||| || | || || |||||||| || || || || | ||| Sbjct 138114 TCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATG 138055 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 ||||||||||| || | ||| || || || || || || ||| |||||||| || || Sbjct 138054 AGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCA 137995 Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCACTTT 42250 || || || ||||||| ||| | | || | || | |||| || ||||| Sbjct 137994 ACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGGATCCATCGG 137935 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 42282 |||||| ||||||||||| || | ||||| Sbjct 137934 ACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 137903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134762092040