Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq76 113 7e-20 >seq76 Length=131010 Score = 113 bits (124), Expect = 7e-20 Identities = 343/520 (66%), Gaps = 14/520 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGT---ACAATGCAATGTCA 96863 || ||||| ||| ||| || | || || ||||||||| | | |||| || | || Sbjct 91560 ACCAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTTAACAA--CACCGCCA 91503 Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||| ||| || || || || || || || || ||| | ||| ||||| | || || Sbjct 91502 -GATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCA 91444 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || ||||| || || |||| | || || ||| || || |||| Sbjct 91443 TGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTT 91384 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CA 97041 || ||| | || | ||||| || |||||| | |||||| | ||||||||||| || | Sbjct 91383 CGTGCCCGTGATCTCTTTTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAA 91324 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | || | | |||||| | |||||||| || || || ||| || ||||| || Sbjct 91323 AAGAACCT--CGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCT 91266 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGA 97160 || || ||||| || || ||| | |||||| |||||| | || ||| Sbjct 91265 ACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTCGCAAGA 91206 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | || | || | | | || ||| | | | || ||| |||||| ||||| |||| Sbjct 91205 -GCATCAAAGCCCAAAAGCTTTGGTACTCTATTCTTGA-GGCTCAAACTGAGACCGGAAA 91148 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 || | ||| || ||||||||| | || || || ||||||||| | | || || Sbjct 91147 CCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGGTAC 91088 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 |||| ||||||| ||||||| || ||||| |||||| Sbjct 91087 CATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGAGTAC 91048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054299746040