Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq224 111 4e-19 seq400 109 1e-18 seq101 93.3 1e-13 >seq224 Length=493007 Score = 111 bits (122), Expect = 4e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| | Sbjct 271515 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 271573 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || | |||||||| ||||| || || || || ||||| | ||||||||||| | Sbjct 271574 AGAGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGG 271633 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | ||||| || || ||||| ||||| | ||| ||||| || | || || || | || | Sbjct 271634 GGATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCGATCGTGTCACTCGACTCGA 271693 Query 104511 CCTCTAGTGTAATAGTCTTACCAGT 104535 |||| || || || ||||| || || Sbjct 271694 CCTCGAGGGTGATGGTCTTGCCCGT 271718 >seq400 Length=416305 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | |||||| || || || ||||| ||||| || | |||| || || Sbjct 399768 AAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATC 399709 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | ||| || || || ||||| || | |||||| ||||| || || || || ||||| Sbjct 399708 CTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATC 399649 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | ||||| | || ||||| || || || || Sbjct 399648 CTGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGT 399589 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || || || || ||||| Sbjct 399588 CTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 100 bits (110), Expect = 7e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || ||||| ||||| | || || || || || ||||| Sbjct 399239 GTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCCTCGAGCTGCTTTCCG 399180 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | |||||||| ||||| ||||| || || ||||| ||||| | || Sbjct 399179 GCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTG 399120 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | ||| ||| || || ||||| || || ||||||||||| || Sbjct 399119 ACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGT 399067 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || ||||| || ||||| | ||||| || ||||| || ||| Sbjct 399524 GTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCAAGTTGCTTACCA 399465 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||||| || || || || || || || ||||||||||| | || Sbjct 399464 GCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTCGACTTG 399405 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| | || ||||| || || || ||||| || || | || Sbjct 399404 ACGTTGTCGATAGTATCCGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 399345 Query 104543 TTTACAA 104549 || |||| Sbjct 399344 TTGACAA 399338 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || || || || || | ||| || || | ||| || || || ||| Sbjct 399974 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 399915 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||||||||| || || || || || |||||||| ||||||| || ||||| Sbjct 399914 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 399855 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || || || | |||||||||||| || || | || || ||| Sbjct 399854 TCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACA 399795 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 399794 AAGATCTGCAT 399784 >seq101 Length=586485 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| || |||||||| || ||||| ||||| || ||||| ||| | ||||| ||| Sbjct 137978 GTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGG 138037 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | ||||| ||| | || | || ||||| ||||| ||||| | | ||| Sbjct 138038 TTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGAC 138097 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || ||| | ||| |||||||| || Sbjct 138098 GAGGGTCTGCACACTGACTTCGCATG 138123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151390596037532