Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq400 89.7 4e-13 >seq400 Length=416305 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || ||||||||||| ||||||||| || ||||| || | ||| ||| | |||||| Sbjct 399764 ACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 399705 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||| || || |||| | ||||| || || || | || ||||| ||| | Sbjct 399704 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 399645 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || ||| ||| | | | || ||||| | |||||| ||||| || ||||| || Sbjct 399644 ATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTCTTC 399585 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || || || ||||| Sbjct 399584 CCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || | |||||||||||||||||||||||||| || | ||| || | |||| Sbjct 399993 CACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATC-GCTGAGTGTACGACCATCCT 399935 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 ||| ||||| ||| || |||| || ||||| ||||| || | || ||||| ||| Sbjct 399934 CCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCT 399875 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | || || || | ||||||| || | ||| || || | Sbjct 399874 GGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCT 399815 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || | || || ||||| |||||||| Sbjct 399814 TGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421248484114529