Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq208 127 3e-25 seq162 109 9e-20 >seq208 Length=52000 Score = 127 bits (140), Expect = 3e-25 Identities = 112/137 (82%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| |||||||||||||| |||||||||||||| || Sbjct 16284 GCCAAGCGTCACCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACCAAGCCAGCCAT 16226 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||||| || ||||||||||| ||||||||| | || | || |||| ||||||| Sbjct 16225 CAGACGTCTCGCGCGTCGTGGTGGTGTCAAGCGTATTTCAGCCATGATCTACGAAGAGAC 16166 Query 16552 TCGTGATGTTTTGAAGA 16568 |||| |||| | |||| Sbjct 16165 CCGTGGTGTTCTCAAGA 16149 >seq162 Length=71978 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| ||||| ||||| || || Sbjct 7678 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACAAAGCCTGCGAT 7736 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 7737 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 7775 Score = 82.4 bits (90), Expect = 1e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| |||| | |||| ||||||| || || |||| || | Sbjct 7837 TGATCTACGAAGAGACCCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGAGACG 7896 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || ||||||||||| || || ||||| || |||||| | || | ||||| | Sbjct 7897 CAGTCACATACACCGAGCACGCCAAGCGAAAGACAGTTACCTCCCTCGACGTTGTCTACG 7956 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | || | |||||||| | |||| ||||| || |||| Sbjct 7957 CTCTCAAGAGACAAGGCCGCACACTTTACGGTTTCGGTGGTTA 7999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074716331597