Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq400 93.3 4e-14 seq224 86.0 5e-12 >seq400 Length=416305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | ||||| | ||||| ||| | Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| |||||| || || || || || || || |||||| Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 399903 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| || |||||| || |||||||||| | || |||| | | |||||||||| ||| Sbjct 399904 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACACTCAGCGATTACAAC 399963 Query 24171 ATTCAAAAAGA 24181 |||||||| || Sbjct 399964 ATTCAAAAGGA 399974 >seq224 Length=493007 Score = 86.0 bits (94), Expect = 5e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| | | ||||| ||||| | |||||| ||||| ||| Sbjct 271706 ATCACCCTCGAGGTCGAGTCGAGTGACACGATCGATAATGTCAAATCCAAGATCCAGGAC 271647 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || || || |||||||| | || || | || |||||||||||||||||| Sbjct 271646 AAGGAGGGAATCCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAGCAACTCGAAGAC 271587 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | | | | | || || || ||||| || || || || || ||||| | || ||| Sbjct 271586 GGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTCGTCTTA 271530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933228121995