Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq400 104 2e-17 seq486 84.2 2e-11 >seq400 Length=416305 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || ||||||||||| || ||||| ||| | Sbjct 399782 CCACCACGAAGACGAAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGAC 399723 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| | |||||||||||| | || | ||||| ||||| || ||| Sbjct 399722 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 399663 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || ||| ||| | | || | |||||| | ||||| | Sbjct 399662 ATACCCTCCTTATCCTGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACC 399603 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| || || || ||||| || ||||| Sbjct 399602 TCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | ||| |||||||| || ||||||||||| | Sbjct 399269 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 399210 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| ||||| || || || ||||| Sbjct 399209 AGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 399150 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 399149 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACC 399090 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||| | || |||||||| Sbjct 399089 TCAAGGGTGATAGTCTTACCGGT 399067 >seq486 Length=791322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| ||||||||||| | ||||| ||||| || ||||| || ||| ||| Sbjct 144942 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 145001 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | ||||| || |||||||| ||||| || || ||||| ||| || ||||| | | Sbjct 145002 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTAT 145061 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | ||||| | || | |||| ||| ||||| || || || || |||| Sbjct 145062 CGATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGA 145121 Query 131225 A 131225 | Sbjct 145122 A 145122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009678815360