Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq400 107 2e-18 >seq400 Length=416305 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || ||||||||||| || |||||||||| || |||| | | ||| Sbjct 399767 AGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCC 399708 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| ||||| || |||| || ||||||||||| || | ||||| || || Sbjct 399707 TCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC 399648 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | ||| || | |||| || | |||||||| Sbjct 399647 TGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTC 399588 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| || || ||||| Sbjct 399587 TTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || ||||| || ||||||||||| | | || | ||||| Sbjct 399539 AGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 399480 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || || ||| | ||||| || ||||||||| || | |||||| ||||| Sbjct 399479 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCC 399420 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | ||| || | |||| || | ||||||||| Sbjct 399419 TGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCACCTCGAGGGTGATGGTC 399360 Query 16904 TTTCCGGTCAGCGTTTTGACAA 16925 || ||||||| || ||||||| Sbjct 399359 TTGCCGGTCAAGGTCTTGACAA 399338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405085388321710