Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq76 266 4e-66 seq101 114 2e-20 >seq76 Length=131010 Score = 266 bits (294), Expect = 4e-66 Identities = 1319/2064 (64%), Gaps = 47/2064 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||||||||| || || || | | ||||| |||||||||||||| || || ||| Sbjct 90098 GTGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 90157 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 61968 || | |||| || ||||||||||| || | || || | || || | || Sbjct 90158 CCCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 90216 Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 90217 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 90276 Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088 || || ||||| || ||||||| || || |||| ||| ||||| |||| | Sbjct 90277 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 90336 Query 62089 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145 ||||| | || || || ||||||||||| || || || | ||||| || | || Sbjct 90337 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 90396 Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205 ||| | | | ||| | | | | || || || || || ||||| |||||||| Sbjct 90397 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGTTGACAACTTGGAATTCTCC 90456 Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265 || | || | |||| ||| || || |||||| || || | |||| || ||| Sbjct 90457 AGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAATCC 90516 Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325 | ||||||| || || || |||||||| || || | ||||| || | | ||| Sbjct 90517 AAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACC 90576 Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACNN 62384 || | ||| | | || | || | |||||| ||||||||| | ||| || Sbjct 90577 GTGTTGAGCGATCTGTTGCTTCA-AGCTAGCCCAATCCCAAAGATCGGTAGGTGTGACAC 90635 Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444 ||| || || ||| ||| ||| ||| |||||| || |||| Sbjct 90636 CCCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATG 90695 Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 62504 | || | ||| || | || || || ||| ||| |||||||| |||| Sbjct 90696 GACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGA 90755 Query 62505 AGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATA 62563 | || | | || || | |||| || || | ||||| ||| | ||||| | Sbjct 90756 AAATTTGAATGTTAAGGTGCTTG-GCCTCTGGAGACTCAAAAGGAAGACG-AAGAGCCAA 90813 Query 62564 -AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 62622 || || || || | ||||||||||| | | | |||||||| || | ||| | | Sbjct 90814 GAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCTCT 90872 Query 62623 TTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62681 ||| || || |||| || || || || | ||| ||||| || || | || |||| | Sbjct 90873 TTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTCTTGACGA 90932 Query 62682 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--CATCTATTACAAAC 62737 |||| | || || | || || | |||||| | | || | ||| | | | Sbjct 90933 CAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACAT 90992 Query 62738 ATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TAT 62794 ||||| | |||| || |||| ||| ||| || ||||||| | | | || || Sbjct 90993 ATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGG-TGCACAGTAC 91051 Query 62795 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 62854 | | ||||||||||| | || | |||||| || | ||| | ||| || ||| Sbjct 91052 TCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTC 91111 Query 62855 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 62914 ||| ||| || |||||||| ||||| ||||| || | || || ||| | |||| || Sbjct 91112 TTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCA 91171 Query 62915 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC-TCTT-- 62971 | ||| | | ||| | | | || || || | ||| | ||| | || Sbjct 91172 AGAATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCCCTCAGAC 91228 Query 62972 TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACAT 63031 |||||| |||||| |||||||||||| || | |||| | ||| |||||||| Sbjct 91229 TCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACAC 91288 Query 63032 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 63091 || | || |||||||| | ||| || || | | || || ||||| |||||||| Sbjct 91289 TCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCT 91348 Query 63092 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 63151 |||||||| ||||| ||| ||||| | || | | ||||| ||||| |||||| Sbjct 91349 GGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTT 91408 Query 63152 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACT 63211 || ||||||||| | | || ||| | ||||| || || | ||| ||||| | | | Sbjct 91409 CGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCA 91468 Query 63212 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63271 ||||| || ||||| || || ||||| | ||||| |||||||| ||| ||||||| | | Sbjct 91469 CCAGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGC 91528 Query 63272 ATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 || |||| || || ||||| | || ||||| || | ||||| ||| | ||||| Sbjct 91529 ATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGG 91588 Query 63332 ATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 63389 || | || ||| ||||| || || || || | || || || | || || | Sbjct 91589 ATTCTGTGAACGTTG--AGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCT 91646 Query 63390 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 63449 | || || || || || || || || || || ||| |||||| | || || ||| | Sbjct 91647 TCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATG 91706 Query 63450 ACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508 | | || ||| | | || || || || | ||| || || ||||| || || || Sbjct 91707 AAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAAGTAT 91765 Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 63567 || || | | ||||| ||||| || || | || |||||| || | || ||||| Sbjct 91766 TTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCG-TGTATTCC 91824 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627 || || |||||||| | ||| || || || | || ||||||| | | | Sbjct 91825 CACCGCAACACGCATAATCATATGTTGTGGACGCTCGCAGATCTTGCCATCGAGACGGAG 91884 Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCG 63685 | || ||| || | || || ||||| || || | ||| ||||| || || ||| Sbjct 91885 GAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGGTCG 91942 Query 63686 TAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA-TC-CATGGTAATAC 63743 || | ||| | |||||||| | ||| | || | || ||| || ||| | | | Sbjct 91943 TAGACAATGGCAGAGTTGAGCTCGGCCTCGTGCTTCATGAC-ACAGTCGTATGTT--TGC 91999 Query 63744 TTG-AAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCC 63802 ||| || || || | |||| ||| |||||||||||||| |||| || Sbjct 92000 TTGCTGATCATGGGTGACAATTTCTTGTTTCGAGGATTGACATAGTGATATAATTCGGAA 92059 Query 63803 ATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 63861 || || | | | ||| | || || |||| |||||| || || || || || ||||| || Sbjct 92060 ATGAC-GCTCGAGAATTGCTTCTTGGTTTGTTTGTGGAGGTTCGAAACTGCAATTCTTGC 92118 Query 63862 GGCTAGAATGGCATAATCCGGATG 63885 || || ||||||||||| || || Sbjct 92119 TGCGAGGATGGCATAATCGGGGTG 92142 >seq101 Length=586485 Score = 114 bits (126), Expect = 2e-20 Identities = 333/512 (65%), Gaps = 3/512 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| ||| | ||||| ||||| || || || || || || | | || || || Sbjct 138414 TTTTGGTAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTC 138355 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| || |||||||| |||||||| || |||| || | | || | | | Sbjct 138354 TCCATAAAGTCGAATGGGTTGGTAACCTTGTAAACCTTCTCATTGCCGAGGGAAAGGAGG 138295 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| ||||| || || || ||| ||||||| | ||||| || | ||| Sbjct 138294 AGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGA 138235 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 | ||||||||| |||| | || ||||| ||||| || || || || || | Sbjct 138234 GCACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACG 138175 Query 32610 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 32669 | |||| | | | || || ||| | || || || | | |||||||| Sbjct 138174 GCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCGAAG 138115 Query 32670 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 32729 || ||| ||||||||||| | || || |||||||| || || || || | ||| Sbjct 138114 TCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATG 138055 Query 32730 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 32789 ||||||||||| || | ||| || ||||| || || || ||| ||||| || || || Sbjct 138054 AGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCA 137995 Query 32790 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTT 32846 || || || ||||||| ||| | | || | || | |||| || ||||| Sbjct 137994 ACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGGATCCATCGG 137935 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG 32878 |||||| ||||||||||| || | ||||| Sbjct 137934 ACAGCCCAGTCGGCCTTCTTCTTGATGCAAGG 137903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627810108400