Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq400 129 5e-25 >seq400 Length=416305 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || ||||||| |||| |||||||| || Sbjct 399556 ATGCAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGAGTCATCG 399615 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| ||||| | || | ||| || || || || || ||||||||||| Sbjct 399616 GATACTATCGATAATGTGAAGTCGAAGATTCAG-GATAAGGAGGGTATCCCACCTGACCA 399674 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || ||||| ||||| || |||| || || || ||| ||||| Sbjct 399675 ACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAA 399734 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || || ||||| || || Sbjct 399735 TATCCAAAAGGAGTCTACACTTCATTTGGTCCT 399767 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || | || ||| | ||||||||||| || Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| || || || || |||||||| || ||| Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 399903 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| ||||| || |||| ||| || | |||||||||| Sbjct 399904 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACACTCAGCGATTACAAC 399963 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 |||||||| || ||| | || || ||||| | || | |||||| Sbjct 399964 ATTCAAAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGAGGA 400011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325206253135