Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq400 114 1e-20 seq224 89.7 4e-13 >seq400 Length=416305 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288 |||| || || || ||||| || || |||| || || ||||| | | ||||| | | Sbjct 399338 TTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTGGAGTCATCGGATACTATCG 399397 Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348 || | |||| || ||||| ||||||||||| || ||||| || ||||||||||||| Sbjct 399398 ACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAACGTCTTA 399457 Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 | ||||| || || || | ||||| |||||| | || || |||||||| || || | Sbjct 399458 TCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACTCTTTCGGACTACAACATCCAGAAGG 399517 Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||| || | || || ||| | ||| | || || ||| Sbjct 399518 AATCTACTCTGCACTTGGTTCTCCGACTCCGTGGTGGT 399555 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || |||| ||||| ||||| | |||| ||| | || | |||| Sbjct 399067 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGACACCATCGATAACGTCAAGTCC 399126 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || |||||||||||| | || |||||||| || Sbjct 399127 AAGATCCAGGACAAGGAGGGAATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGAAAG 399186 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| || || | || ||||||||||| || || || |||||| | || Sbjct 399187 CAGCTCGAGGATGGACGTACTCTGTCTGATTACAACATCCAGAAGGAGTCCACCCTTCAC 399246 Query 22423 TTAGT 22427 || || Sbjct 399247 TTGGT 399251 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || ||||||| || ||||| | | Sbjct 399556 ATGCAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGAGTCATCG 399615 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || ||||| || ||||||||||| ||||| || ||| Sbjct 399616 GATACTATCGATAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 399675 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| || || |||||| ||| ||| | ||||| ||||| Sbjct 399676 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAT 399735 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || || | ||||| || Sbjct 399736 ATCCAAAAGGAGTCTACACTTCATTTGGT 399764 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || | || | |||||||| | | Sbjct 399784 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACATTGGAAGTGGAGTCTTCA 399843 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| || || || ||||||||||||||||| |||||| Sbjct 399844 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 399903 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| || || |||||| || || || |||||||||| Sbjct 399904 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGTCGTACACTCAGCGATTACAAC 399963 Query 22399 ATTCAAAAAGA 22409 |||||||| || Sbjct 399964 ATTCAAAAGGA 399974 >seq224 Length=493007 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351 || ||||| || || || ||||||||||| || || || ||||||||||| || || | Sbjct 271669 ATGTCAAATCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGATCAACAACGCCTAATCT 271610 Query 22352 TTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAAT 22411 | |||||||| || | || || ||| ||| |||| || |||||||| || || || | Sbjct 271609 TCGCCGGCAAGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGT 271550 Query 22412 CCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | ||| | ||| | || || || | || ||||| Sbjct 271549 CGACCCTTCATCTCGTCTTACGTCTACGTGGAGG 271516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725293934885