Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq400 100 2e-16 >seq400 Length=416305 Score = 100 bits (110), Expect = 2e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| |||| | ||| || || | |||||||| || || |||||||| || Sbjct 399557 ATACCACCACGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCC 399498 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || || |||||||| |||||||| |||| ||||| ||||||||||| Sbjct 399497 GAAAGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGT 399438 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | || | || || | || || Sbjct 399437 GGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCC 399378 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 || || | ||| | || |||||||||| || || |||| Sbjct 399377 ACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAA 399338 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || |||||||||||||||||||| | |||||| ||| || | ||| || || ||| | Sbjct 399974 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 399915 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | |||||||| || || ||||| || || || || |||||| || | | Sbjct 399914 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 399855 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| ||||| | || || || |||| || | || ||||| |||| || || ||| Sbjct 399854 TCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACA 399795 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 399794 AAGATCTGCAT 399784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131691314748