Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq101 199 7e-46 >seq101 Length=586485 Score = 199 bits (220), Expect = 7e-46 Identities = 367/519 (71%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 || ||||||||||||||||| |||||||| || |||||| | || | | | | || Sbjct 137903 CCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCCAC 137961 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | | || || ||||| |||| || ||||| ||||||||| ||| | || Sbjct 137962 CTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTT 138021 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||| | ||| || || || ||| | || || |||||||| |||| Sbjct 138022 CGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACG 138080 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | | ||| | | |||||||| ||||| | ||||| || ||||| || ||||| || Sbjct 138081 AGTTGATCTCCCGTGACGAGGGTCTGCACACTGACTTCGCATGCCTTCTCTTCTC---CC 138137 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGG-AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 || | | ||| |||| | |||| ||| |||| |||| ||||||| ||||| || || Sbjct 138138 ACTTGAAGCA-TCGCCCAAGCAAGGCAGC-AGTCCAGGCCGTCATCACCGAGGCTGTTGA 138195 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACG 42987 ||| ||| | |||||| | || || | || || ||| | || ||||||||||| | Sbjct 138196 GATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTG-CTCTTCTCGGCATGAACGCCA 138254 Query 42988 ACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045 || | ||| |||| ||||| ||| |||||| || | |||||| | | || | Sbjct 138255 ACTTGATGAAGCAA-TACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAAT 138313 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 || | | ||||| | ||| ||||||||||||||||||||||| | | || Sbjct 138314 GAGAAG-GTTTACAAGGTTACCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCCGG 138372 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||| || || ||||| ||||| || ||||| Sbjct 138373 AAAGACCAACTTCTTTGAAAAGCGTGTCGCTGATTACCA 138411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332955557040