Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq400 149 1e-30 seq101 113 1e-19 seq486 93.3 1e-13 seq482 91.5 3e-13 >seq400 Length=416305 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || || ||||||||||| ||||||| Sbjct 399782 CCACCACGAAGACGAAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGAC 399723 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || ||||| || |||||||| || || |||||||| | |||| Sbjct 399722 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 399663 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || |||| ||||| || || |||| ||| || || || Sbjct 399662 ATACCCTCCTTATCCTGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACC 399603 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||||||||| || ||||||||||| || ||||| Sbjct 399602 TCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 104 bits (114), Expect = 6e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | ||| || | || | ||||| || ||||| || || || ||| Sbjct 400013 TGTCCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCG 399954 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||| || || || || || ||||| || || ||||| |||| ||||||||| | Sbjct 399953 CTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGT 399894 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||||||||| || | || || || || || | || || || Sbjct 399893 GGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCC 399834 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || |||| |||||||| || |||||||| Sbjct 399833 ACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 >seq101 Length=586485 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | ||| ||| | || ||| || | |||| ||||| ||| | | |||| Sbjct 138204 AAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGATGA 138263 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236 | ||||| || || ||||| ||||||||| || || | ||||| ||||||| || | Sbjct 138264 AGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATGAGAAGGTTT 138323 Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296 |||| | || || |||| ||||||||| || || || | |||||||| |||| Sbjct 138324 ACAAGGTTACCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCCGGAAAGACCAACT 138383 Query 269297 TCTTCGAAAAGCGTGTC 269313 |||| |||||||||||| Sbjct 138384 TCTTTGAAAAGCGTGTC 138400 >seq486 Length=791322 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || || || | || |||||||| || || | ||| ||||| ||||||||| Sbjct 144944 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 145003 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||| ||||| |||||| || || || |||||||| || | || || || || Sbjct 145004 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCG 145063 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || ||||| | || || ||||| || || || ||||||||||| Sbjct 145064 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 145122 >seq482 Length=372737 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 326054 ATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAG 326113 || ||| |||| || |||| |||| ||||||||||| ||| ||||||||||| | Sbjct 238020 ATATGACTTCCATCGTGATCCTGATCGGCCATGATCATCAGATGCCCGTAACGAAGACCG 237961 Query 326114 GACGTGTCTTTGTACACTTTACCG-GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGA 326171 |||||| |||| |||| | |||| ||| || |||| |||||| | | ||| || Sbjct 237960 TTCGTGTCGGTGTATACTTGTTTGTGTTTCAAG-CCAAGAAATTGTTTAATGTTCTG-GA 237903 Query 326172 TTTCTTCGTTCTTCGTGATGCTTG--CCACGGATGCATCGCGGACGTTCAATAGTTTTCC 326229 |||| | ||||||||||| ||| | | |||||| || ||||| | || ||| || Sbjct 237902 TTTCGGCATTCTTCGTGAT--TTGATCGATTCCTGCATCTCGAACGTTGAGTAATTTACC 237845 Query 326230 ACGAAGAGGGAACACTCCA 326248 ||||| |||||||| ||| Sbjct 237844 TCGAAGTGGGAACACACCA 237826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179646404523662