Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq482 87.8 4e-12 seq101 87.8 4e-12 >seq482 Length=372737 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 298175 ATGTGAGTTCCGTCAACATCCGCGTCGGTCATGATCATCACATGACCGTAACGAAGCGAG 298234 || ||| |||| || |||| |||| ||||||||||| ||| ||||||||||| | Sbjct 238020 ATATGACTTCCATCGTGATCCTGATCGGCCATGATCATCAGATGCCCGTAACGAAGACCG 237961 Query 298235 GACGTGTCTTTGTACACTTTACCG-GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGA 298292 |||||| |||| |||| | |||| ||| || |||| |||||| | | ||| || Sbjct 237960 TTCGTGTCGGTGTATACTTGTTTGTGTTTCAAG-CCAAGAAATTGTTTAATGTTCTG-GA 237903 Query 298293 TTTCTTCGTTCTTCGTGATGCTTG--CCACGGATGCATCGCGGACATTCAATAGTTTTCC 298350 |||| | ||||||||||| ||| | | |||||| || || || | || ||| || Sbjct 237902 TTTCGGCATTCTTCGTGAT--TTGATCGATTCCTGCATCTCGAACGTTGAGTAATTTACC 237845 Query 298351 ACGAAGAGGGAACACTCCA 298369 ||||| |||||||| ||| Sbjct 237844 TCGAAGTGGGAACACACCA 237826 >seq101 Length=586485 Score = 87.8 bits (96), Expect = 4e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 ||||||| || || ||||| | || | || ||| | || ||| |||| || | Sbjct 138177 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTC 138236 Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 || | ||||||||| | | | ||| || ||||| || ||||| || || || | Sbjct 138237 TTCTCGGCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCC 138296 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 || | | || || ||||||| || ||||| | ||||| || | |||||||||| Sbjct 138297 TCCTTTCCCTCGGCAATGAGAAGGTTTACAAGGTTACCAACCCATTCGACTTTATGGAGA 138356 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||| || ||| || || || |||||||| |||||||||||| |||||| ||| Sbjct 138357 ACATCTCTCTTGCCGGAAAGACCAACTTCTTTGAAAAGCGTGTCGCTGATTACCAA 138412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102872524886150