Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq76 233 2e-56 seq101 105 8e-18 seq79 96.9 4e-15 >seq76 Length=131010 Score = 233 bits (258), Expect = 2e-56 Identities = 1134/1783 (64%), Gaps = 57/1783 (3%) Strand=Plus/Plus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 |||| ||||||||| || ||| | | ||||| |||||||| || |||||||| | Sbjct 90099 TGAATTGAATGGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGAC 90158 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 113684 || ||||||| | | |||||| || | ||| | ||||| | |||| Sbjct 90159 CCAACTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGT 90218 Query 113685 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCA 113744 || |||||| ||| |||||||| ||||| ||||| || || ||||| | | | Sbjct 90219 GGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA 90278 Query 113745 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 113802 | | | | ||| | ||||| || || |||| || ||| |||||| ||||||| Sbjct 90279 --TGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGAT 90336 Query 113803 ATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 113862 | | ||||||||| || ||||| | | || | | |||||| | | || Sbjct 90337 GTTTGGAACATTTTGGATTGATCCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGA 90396 Query 113863 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 113920 ||| || || || | |||||||| | || ||| | ||||||| || || Sbjct 90397 CCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGGGT--TGACAACTTGGAATTCT 90454 Query 113921 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 113979 || || ||| |||| ||| ||||| |||| || |||||||| |||||||| ||| Sbjct 90455 CCAGCAAGGACACGTCG-AGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGA- 90512 Query 113980 ACCCAAGATTTGGGC-GGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGA 114038 | |||||| || | | ||| |||||| ||||| || || | ||| | |||||||||| Sbjct 90513 ATCCAAGAATTTGACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGA 90572 Query 114039 GACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG---TTG--AGCTTTGT 114093 ||| | || || ||| ||| | | |||| || | | | || | || Sbjct 90573 TACCGTGTTGAGCGATCTGTTGCTTCAAGCTAGCCCAATCCCAAAGATCGGTAGGTGTGA 90632 Query 114094 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGT 114153 | |||| |||| ||| | ||||| || | ||||| ||||| || | | |||| Sbjct 90633 CACCCC-----ACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGT 90687 Query 114154 CTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 114213 ||| ||||| || | || || ||||| || | || | || ||||| || || Sbjct 90688 CTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAAT 90747 Query 114214 TGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG--G 114271 ||||| ||||| || || | ||||||||| || ||||| | || || | Sbjct 90748 GGTCTCGAAAATTTGAATGTTAAGGTGCTTGGCCTCTGGAGACTCAAAAGGAAGACGAAG 90807 Query 114272 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 114331 | || || |||| || |||||||| |||||||| |||| || | || | | | Sbjct 90808 AGCCAAG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAA 90865 Query 114332 TTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 114388 || ||||| || ||| || || || | || |||||||| | | || | Sbjct 90866 TTGCTCTTTCTTGC---CTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGTTCAAG 90922 Query 114389 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 114448 || ||| |||||| | || || |||||||| | | ||||| || || ||||| Sbjct 90923 TTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTC 90982 Query 114449 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 114508 || | |||||| | || || || | ||||||| ||| || || | |||||| Sbjct 90983 TCGTCGACATATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCATCTGGT 91042 Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 114568 || |||||| | ||| || || ||||| || || || ||||| || | |||||| Sbjct 91043 GCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTT 91102 Query 114569 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 114628 || || |||| ||| || |||||||||||||||||| | || | || ||||| ||| Sbjct 91103 TGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTT 91162 Query 114629 TGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCC 114688 || | || ||||||| | ||| | | |||| | || ||| || ||| Sbjct 91163 TGAGCCTCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGA---TGCTCTTG---CGACCC 91216 Query 114689 T---CCTC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 114742 | |||| |||||| || || | ||||| ||||| ||||| | | || | Sbjct 91217 TTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCC 91276 Query 114743 AGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTC 114802 | || || || | ||||| | | | ||| | || |||||||||||| Sbjct 91277 AAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTC 91336 Query 114803 ATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 114862 |||||||| ||||| ||||||||||| | |||||||| || ||| | || || | Sbjct 91337 ATGAAGAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTT 91396 Query 114863 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 114922 || || || || | || | || || | | ||| |||||||| || || ||||| Sbjct 91397 CCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAG 91456 Query 114923 ACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCA 114976 | |||| | || | |||| |||| | || | ||||| || || ||| Sbjct 91457 ATGGCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTG 91513 Query 114977 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA 115036 ||||| || | ||||| |||| ||| || | || | || || || || |||| | Sbjct 91514 TTAAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAA 91573 Query 115037 GACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 115096 | | | || | || || | || | ||| ||||| || || |||||| || Sbjct 91574 GCACCAGTAGCACGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTCTTTGAAATC 91633 Query 115097 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATA 115156 || || | | | || |||| || || || || ||| |||| | |||| Sbjct 91634 ATAGCACAAATCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATC 91693 Query 115157 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 115216 ||||||||| || | ||||| | |||||||||||| ||| ||||| || | ||| Sbjct 91694 AGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGGGGGAGGCG 91753 Query 115217 TGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTT 115274 ||| |||| || ||| ||||||| | ||||||||| | | | || || || | Sbjct 91754 TGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCT 91811 Query 115275 CCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 | ||||| || || | || || ||||||| ||| | ||| || Sbjct 91812 CACCGTGTATTCCCACCGCAACACGCATAATCATATGTTGTGG 91854 >seq101 Length=586485 Score = 105 bits (116), Expect = 8e-18 Identities = 296/446 (66%), Gaps = 14/446 (3%) Strand=Plus/Minus Query 125768 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 125827 || ||||| || |||||||| ||||| ||| | | ||| ||||||||||| || ||| Sbjct 138399 ACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATAAAGTCGAAT 138340 Query 125828 GGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGACGATCCGAGAC 125886 ||||| | || ||| || || || | |||||||||||| | ||| Sbjct 138339 GGGTTGGTAACCTTGTAAACC-TTCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCGAC 138281 Query 125887 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGC 125946 | |||||||||| | |||| | | |||||| |||| || ||| || || || Sbjct 138280 GAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAGC 138221 Query 125947 GTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGTGAA-TGGTGT 126005 || | |||| | | |||||| || || || || | || ||| || | || || Sbjct 138220 CTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCTG- 138162 Query 126006 CCACCCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCA----AACTCTTGGTG 126060 || | || | || || |||| |||||| | |||| || || ||| Sbjct 138161 CCTTGCTTGGGCGAT-GCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCAGTGTG 138107 Query 126061 GAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCG 126120 |||||||||||||||||||| | || || |||||| || || | |||||| || || Sbjct 138106 CAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACG 138047 Query 126121 CTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGC 126180 ||||||||||||||| || | || || || ||||||||| ||||| ||| || Sbjct 138046 CTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCGGC 137987 Query 126181 GAACGCAAAGAGACGCTCAGCAAAGG 126206 ||| |||| ||||| | ||||||| Sbjct 137986 GAAGGCAACAAGACGTTGGGCAAAGG 137961 >seq79 Length=601583 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 11026 ||||| |||||||| ||||| | ||||| || ||| | | ||| | |||||| | Sbjct 306268 GCGTCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGA 306209 Query 11027 TCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CGGCGGAAC 11084 ||||| ||||| ||||| ||||| ||||||||||||||||| | || | | | || Sbjct 306208 TCTCGAACTCTGGAAGCACCAACACCAACAAACATTTCCACAAACTCGGAACCACTG-AC 306150 Query 11085 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | | || ||| || || ||||| || || ||||| ||| || | ||||| || | Sbjct 306149 ACT-GAAGAAAGGTACACCTGATTCTCCGGCAGTGGCTTTGGCTAGTAAAGTCTTACCAG 306091 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 | |||||| || | ||||| || || || |||||| | ||||| Sbjct 306090 TACCAGGTGGACCAGAGAGAATAGCTCCTCGAGGGATCTTAGCACC 306045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349649999320