Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq76 196 5e-45 >seq76 Length=131010 Score = 196 bits (216), Expect = 5e-45 Identities = 470/706 (67%), Gaps = 4/706 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| |||| ||||| ||| || || || || | |||| | || || || |||||| Sbjct 91752 GCCTCCCCCACCCTTTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTG 91693 Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 || ||| | |||| ||| ||| || |||| ||||| | ||| ||||| | Sbjct 91692 ATCGAC-ATGAAGGAGGACAGCATTGATGGTATTTACGACACATTGAAGATTTGTGCTAT 91634 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 || ||||| |||| || || ||||| ||| || ||| | ||||| | ||| | Sbjct 91633 GATTTCAAAGAACGCTGGTGGTATCGGTCTCAACGTTCACAGAATCCGTGCTACTGGTGC 91574 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 || || ||||||||| || | ||||||||| |||| ||||||||| | || || || Sbjct 91573 TTATATTGCCGGTACCAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTTAA 91514 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| | || | || || || || |||||| | | | ||| ||||||| |||| Sbjct 91513 CAACACCGCCAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTA 91454 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || ||||| |||||||| || || | ||| ||||||| |||||||||||||| || Sbjct 91453 CCTTGAGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAA 91394 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || || | ||| | || ||||| |||||||||||| | ||||| || || ||||| Sbjct 91393 GGAGGAGGTTCGTGCCCGTGATCTCTTTTACGCTCTCTGGATTCCAGATCTCTTCATGAA 91334 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 || || || || ||| || ||||| | | || || || || ||||| || || | Sbjct 91333 GCGTGTTGAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGC 91274 Query 94371 CGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 ||| || | || | || || |||| ||||||| ||||| || ||||||||| Sbjct 91273 CGATGTCTACGG-TGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGG 91215 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | ||| || | || ||||| ||| | || | || | || |||| Sbjct 91214 GTCGCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATTCTTGAGGCTCAAACTGAGA 91155 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | || | || | ||| | | |||||| || |||| ||| |||||| || | | Sbjct 91154 CCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATC 91095 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTA 94595 |||| ||| ||||| || ||||||| |||||||||||||| Sbjct 91094 TCGGTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGAGTA 91049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719928642840