Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq400 87.8 2e-12 >seq400 Length=416305 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | |||||||| || |||||||| || | Sbjct 399269 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 399210 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||| || || |||| | |||| | ||| ||||| || ||||| Sbjct 399209 AGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGA 399150 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 399149 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACC 399090 Query 138568 TCGACCGTCAGCGTTTTACCAGT 138590 || | || | || ||||| || Sbjct 399089 TCAAGGGTGATAGTCTTACCGGT 399067 Score = 82.4 bits (90), Expect = 8e-11 Identities = 132/186 (71%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | ||| || |||||| ||||| ||||| | | Sbjct 399521 GATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCAAGTTGCTTACCAGCA 399462 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| ||||| ||||||||||| || || || || ||||| ||| | || | || | Sbjct 399461 AAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTC-CTGAATCTTCGACTTGAC 399403 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | || || | ||||||||||||| || | || || || |||| || | Sbjct 399402 GTTG-TCGATAGTATCCGATGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCT 399344 Query 138599 TTACAA 138604 | |||| Sbjct 399343 TGACAA 399338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259118464880