Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq400 86.0 4e-12 >seq400 Length=416305 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || ||||| ||||||||||||||||| | | | || || ||||| ||||| ||| | Sbjct 399974 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 399915 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| |||||||| || |||||| || ||||| || || || || ||| | Sbjct 399914 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 399855 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || || || || | || || || || ||||| || || || |||| || || ||| Sbjct 399854 TCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACA 399795 Query 15166 AAAATTTGCATA 15177 || || |||||| Sbjct 399794 AAGATCTGCATA 399783 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || |||||||| ||||| || ||||| || ||||| ||| || || ||| | || | Sbjct 399764 ACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCG--GACAAGGTTCGGCCATCCT 399707 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| ||||| ||| | || | ||||||||||| ||| || || ||||| || Sbjct 399706 CCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCT 399647 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTT 15144 ||| || || ||| | || |||||||| | || || || || | || ||||| Sbjct 399646 GAATCTTCGACTTCACATTATCGATAGTATC-CGATGACTCCACCTCGAGAGTGATGGTC 399588 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || || ||||||||| Sbjct 399587 TTCCCGGTGAGGGTCTTGACGAAGATTTGCATA 399555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389695826765