Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq400 122 2e-22 seq486 93.3 1e-13 >seq400 Length=416305 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || |||||||| |||| |||||| |||| || ||| | |||||| Sbjct 399254 AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCC 399195 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||| | ||| || || || ||| |||||| || ||| Sbjct 399194 TCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCC 399135 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 399134 TGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 399075 Query 199598 TTACCCGTGA 199607 ||||| |||| Sbjct 399074 TTACCGGTGA 399065 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || || || ||||||||||||| |||||||| | ||| || Sbjct 399776 CGAAGACGAAGGACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTT 399717 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 399716 CGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCC 399657 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| |||| || || | || || || || | Sbjct 399656 TCCTTATCCTGAATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGA 399597 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || ||||| Sbjct 399596 GTGATGGTCTTCCCGGTGAGGGTCTTGACGAAGATTTG 399559 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || | ||| ||||| || ||||| |||| ||||||||| | | ||| Sbjct 399548 CGGAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 399489 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| || || ||||| ||||| || |||||||| || || Sbjct 399488 CGGCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCC 399429 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| || || | || || || || | Sbjct 399428 TCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCACCTCGAGG 399369 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||||| ||||| || || | || || |||| Sbjct 399368 GTGATGGTCTTGCCGGTCAAGGTCTTGACAA 399338 >seq486 Length=791322 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| |||||| || | | ||| | |||||| || || |||||||| ||||||| Sbjct 144942 CCTTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGA 145001 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||| || |||||||| || || || ||||| ||||| ||| || | Sbjct 145002 TCAAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTAT 145061 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || ||||| || || ||||||||||| || || || || | Sbjct 145062 CGATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGA 145121 Query 199620 A 199620 | Sbjct 145122 A 145122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913609490443