Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq224 114 1e-20 seq400 113 5e-20 >seq224 Length=493007 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || ||| || || ||||| | || |||||| ||||| |||||||| || Sbjct 271516 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 271575 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||| |||||||||||||| || | ||| || || || | || Sbjct 271576 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGG 271635 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||||| |||||| |||| | | | |||||| ||||| || || Sbjct 271636 ATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTATCGATCGTGTCACTCGACTCGACC 271695 Query 46547 TCCACCGTGATGGTTTTGCCCGT 46569 || | |||||||| |||||||| Sbjct 271696 TCGAGGGTGATGGTCTTGCCCGT 271718 >seq400 Length=416305 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | ||||| ||||| || ||||||||||| || ||||| ||| Sbjct 400010 CCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 399951 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || | |||||||||||||| ||||| ||||| || || | || Sbjct 399950 AGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCTGGTGGA 399891 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| |||||| ||||| | | | ||||| || ||||| Sbjct 399890 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCTGAAGACTCCACT 399831 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || |||||||||| || || |||||||| ||||| Sbjct 399830 TCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 399784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | |||| |||||||||||||||||||||||| | || || | || || Sbjct 399764 ACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 399705 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||||| ||||| || | ||||| ||||| | || | | |||||| ||| Sbjct 399704 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 399645 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | || || || ||||| || | |||||||| || Sbjct 399644 ATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTCTTC 399585 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 399584 CCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 82.4 bits (90), Expect = 9e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || ||||| || | || ||||||||||| ||||| || Sbjct 399234 CTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCCTCGAGCTGCTTTCCGGCAAA 399175 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || || || | || | | |||||||||| |||||| ||||| | Sbjct 399174 GATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 399115 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| || ||||| || | ||||| || || || || Sbjct 399114 ATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGT 399067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234662361080