Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq400 96.9 2e-15 >seq400 Length=416305 Score = 96.9 bits (106), Expect = 2e-15 Identities = 171/248 (69%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 39473 AAATACATATCCAATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCT 39531 ||||| || || |||| | || || || | ||| || ||||| ||||||||||| || Sbjct 400031 AAATATGTACACACTCATTGTCCTCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCC 399972 Query 39532 TTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATT 39591 ||||| || || |||||| | || |||| |||||||| || ||| | ||||| Sbjct 399971 TTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATC 399912 Query 39592 AAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCT 39651 || ||||| ||||| | || | || || || || || ||| || | | | Sbjct 399911 AATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA 399852 Query 39652 ACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAG 39711 | |||||||| ||||| ||||| ||||| || || ||||| || || || || ||| Sbjct 399851 ATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACAAAG 399792 Query 39712 ATCTGCAT 39719 |||||||| Sbjct 399791 ATCTGCAT 399784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347367360443057