Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq101 125 7e-24 seq224 107 2e-18 seq400 102 8e-17 >seq101 Length=586485 Score = 125 bits (138), Expect = 7e-24 Identities = 193/275 (70%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||| || |||||| || || | || ||||| | ||||||||| |||||| || Sbjct 137797 TAGGTATCTATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATGATTTGGAAA 137738 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||| | || ||||| | || ||||| ||| ||||||| || ||| Sbjct 137737 CCGTAGAAGAATCGGGCCTCTGGGATTTGGACTTCACTGCTGAAGCGCTCGAGGAGGTTT 137678 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 |||||||| || ||||| ||| ||||| || || || ||||| |||||| | ||| Sbjct 137677 TCGTTGACAATTCCGTCAGAGGCAGCGAAGAAAGCGAGGACGTGGGAGATGAAGTAACGC 137618 Query 133348 TCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| ||||| | | | ||||||| | |||||||| || || | ||||||| Sbjct 137617 TCGTCATCGTTGAGCTTGTTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCG 137558 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || || ||||| || |||||||| Sbjct 137557 GCAGTCCAGAATGAAGCTTCGGCCTTCTTGTACAT 137523 >seq224 Length=493007 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||||||||| ||||||||| |||| |||||| | | |||| | | | | ||| Sbjct 271720 TCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGAGTGACACGATCGATAATGTCAAAT 271661 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| |||||||| ||| | || ||||| || || || | ||| |||| Sbjct 271660 CCAAGATCCAGGACAAGGAGGGAATCCCCCCTGATCAACAACGCCTAATCTTCGCCGGCA 271601 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | || || || |||| || |||||| |||||||||||||| ||||| |||| || | Sbjct 271600 AGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 271541 Query 38446 AT 38447 || Sbjct 271540 AT 271539 >seq400 Length=416305 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || |||||||| |||| || ||| | | Sbjct 399556 ATGCAAATCTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTGGAGTCATCG 399615 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || || || | || || ||||| || || | |||||| Sbjct 399616 GATACTATCGATAATGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 399675 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| ||| ||||| || |||| || | || ||| | ||||||||| Sbjct 399676 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAT 399735 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || |||||||| || ||| Sbjct 399736 ATCCAAAAGGAGTCTACACTTCATTTGGTCCTTCGT 399771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169492607360