Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2 129 4e-24 seq4 116 3e-20 >seq2 Length=651517 Score = 129 bits (142), Expect = 4e-24 Identities = 450/700 (64%), Gaps = 2/700 (0%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || ||||||||||| ||||| ||||| ||||| | |||| |||| || | | ||| Sbjct 502840 ACGAGACGATTATCGAAATCCTCACCACCCAAGTGCGTATCACCTGCGGTGGACTTGACT 502781 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | || || || | | ||| || | ||||| ||||| ||||| | |||| Sbjct 502780 TCAAAGATACCCTCCTCGATGGTCAAGAGCGAGACATCGAAAGTTCCTCCACCAAGATCA 502721 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || || || || || || |||||||| |||| || ||| Sbjct 502720 AAGATGAGAACGTTTCGCTCACCCTCAACCTTCTTGTCGAGACCATATGCAATGGCGGCA 502661 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || || || || |||| | ||| || |||||||| || || || || || Sbjct 502660 GCGGTAGGCTCGTTGATGATTCGGAGAACGTTGAGACCAGCGATCAAACCGGCGTCCTTG 502601 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 |||||||| | |||||||||| |||| ||||| || || || | ||||| | | || Sbjct 502600 GTGGCTTGACGTTGTGAATCGGTAAAGTATGCTGGGACGGTCACGACGGCGTTGTTGACG 502541 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 | ||||| || || || || | | |||| || || ||||| || || ||| Sbjct 502540 GTTCCACCAAGGTACGCCTCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATT 502481 Query 518375 TGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATT 518433 | ||||| | ||||||| || |||| | | || | | | || || Sbjct 502480 TCCTCTGGTGTGAATTGCTTCTTCTCGCCCTTGAACTCAATCTCGACGACA-GGCTTTCC 502422 Query 518434 ACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATT 518493 |||| | | || | || || ||| |||||||| | || || ||||| Sbjct 502421 ACCACGGTCGAGGACGGTGAAGGGAAAGTGCTTCATATCAGCCTGGACTTCCTGGTCTGC 502362 Query 518494 AAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGC 518553 || | | || || | || ||||| ||||| | || |||| || || || ||| | Sbjct 502361 GAACTTGCGTCCGATCAGACGCTTTGCGTCAAAGACTGTGTTGGCGGGGTTCATGGCAAC 502302 Query 518554 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 518613 ||| | || || |||||||| |||||| | || || ||||| || | ||| | || || Sbjct 502301 TTGGTTCTTTGCGGCATCTCCGATCAGACGCTCGGTATCTGTGAAGGCAACGAAGGAAGG 502242 Query 518614 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 518673 || || || || || || || || || ||||| |||| | | ||| | | | ||| Sbjct 502241 GGTGGTTCGGTTTCCCTGGTCGTTGGCGATAATCTCAATTCGATCATCACGATAGATACC 502182 Query 518674 TACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 ||||| | || ||||| | ||| ||||| || ||| Sbjct 502181 CACACAGGAGTAGGTGGTTCCAAGATCGATACCTATGGCA 502142 Score = 107 bits (118), Expect = 1e-17 Identities = 316/482 (66%), Gaps = 9/482 (2%) Strand=Plus/Minus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || |||||||| | |||||| ||||| || ||||| ||||| || | | |||||| Sbjct 503639 ATTCCGTTGGCATCAACATCAAAGGTGACCTCGATTTGTGGGACACCACGTGGTGCAGGT 503580 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 503579 GGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 503520 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||| | ||||||| || ||| ||| || || || | || | || || | Sbjct 503519 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACCTCG 503460 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || ||||| || |||||||| || | |||||||| |||||| || Sbjct 503459 GACTTCTTGGTTGGAATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCAGCA 503400 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| || || | || | |||||| | |||| || | || | | || Sbjct 503399 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 503340 Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | || | || ||||| || || || | |||||||| ||||||||||| ||| Sbjct 503339 GAAGAGGTGTCTCCGGAGAGAATGGCGGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 503280 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG---TTGT 517687 ||||| || | | | ||| | | || || ||||| ||| | || || ||| Sbjct 503279 TCAGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAAGTAATCGGTAATGAGCTTTTGG 503220 Query 517688 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747 || ||| || ||||||| || ||||| || | || || || || |||| ||||| Sbjct 503219 ATT--CTT-GGGATACGAGTGGAACCTCCGACGAGGACGATCTCGTGAACCTTGGATTTG 503163 Query 517748 TC 517749 || Sbjct 503162 TC 503161 >seq4 Length=230096 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || || || || |||| |||||||||||||| || |||| | ||||| ||| ||| Sbjct 42153 TTCTCCAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTAACCACTCTCAGAACGTTA 42094 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| |||||| || ||||| || |||||||| | |||||||||||| || ||||| Sbjct 42093 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCT 42034 Query 518288 GGAACAGTAATAACGGCAT 518306 || || || | |||||||| Sbjct 42033 GGGACTGTGACAACGGCAT 42015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780796149277474