Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 298 7e-76 seq444 167 3e-36 seq76 145 1e-29 seq4 86.0 8e-12 >seq2 Length=651517 Score = 298 bits (330), Expect = 7e-76 Identities = 519/752 (69%), Gaps = 6/752 (1%) Strand=Plus/Minus Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 |||||||| || || ||||| ||||| | ||| || | ||| | ||||||| Sbjct 502882 TCTTTCTTGTGCTTGCGTTTGAACTCCGAAACGAAATGATTGACGAGACGATTATCGAAA 502823 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||||||| ||||| || ||||| | ||||||||||||||||| | || Sbjct 502822 TCCTCACCACCCAAGTGCGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCG 502763 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | || | ||| ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 502762 ATGGTCAAGAGCGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGC 502703 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | || ||||| |||||||| || || || || || || || || || || || Sbjct 502702 TCACCCTCAACCTTCTTGTCGAGACCATATGCAATGGCGGCAGCGGTAGGCTCGTTGATG 502643 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 || || ||| ||| || ||||| || | || || || || ||||| ||||| ||| Sbjct 502642 ATTCGGAGAACGTTGAGACCAGCGATCAAACCGGCGTCCTTGGTGGCTTGACGTTGTGAA 502583 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||| ||||||| || ||||| || ||||| |||| |||| | ||| || |||| Sbjct 502582 TCGGTAAAGTATGCTGGGACGGTCACGACGGCGTTGTTGACGGTTCCACCAAGGTACGCC 502523 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | ||| |||| ||| | | ||| || || || || || | | || || Sbjct 502522 TCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCCTCTGGTGTGAATTGC 502463 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | || || || || |||| || | | || || || || ||| | || || Sbjct 502462 TTCTTCTCGCCCTTGAACTCAATCTCGACGACAGGCTT-TC--CACCACGGTCGAGGACG 502406 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | | | |||||||| | ||||| | ||||| | ||||| | |||||| Sbjct 502405 GTGAAGGGAAAGTGCTTCATATCAGCCTGGACTTCCTGGTCTGCGAACTTGCGTCCGATC 502346 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 ||||||||||| ||||| |||||||| |||||||||||| ||||||||| || || Sbjct 502345 AGACGCTTTGCGTCAAAGACTGTGTTGGCGGGGTTCATGGCAACTTGGTTCTTTGCGGCA 502286 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| ||||| || || || || || || ||| | || ||||| ||||| || Sbjct 502285 TCTCCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAAGGAAGGGGTGGTTCGGTTT 502229 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || |||||||| || ||||| || | || || | | ||| || || || || || Sbjct 502228 CCCTGGTCGTTGGCGATAATCTCAATTCGATCATCACGATAGATACCCACACAGGAGTAG 502169 Query 8123 GTTGTTCCTAAATCAATACCGATTGCTTGAGT 8154 || ||||| | ||| ||||| || || |||| Sbjct 502168 GTGGTTCCAAGATCGATACCTATGGCAGGAGT 502137 Score = 168 bits (186), Expect = 8e-37 Identities = 543/842 (64%), Gaps = 17/842 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| || || || || || || Sbjct 503774 TCATCCTCAGCCTTGTACTTCTCGGCCTCAGCCAACATGCGCTCGATATCCTCCTTGGAC 503715 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| || || || || |||||| | ||||||||| | |||| || | Sbjct 503714 AAACGTCCCTTGTCGTTGGTGATGACAATCTTGTTGGATTTACCGGTTCCCTTCTCGAGA 503655 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| || || || ||||||||||| || | || | |||||||| | Sbjct 503654 GCAGAGACGTTCATGATTCCGTTGGCATCAACATCAAAGGTGACCTCGATTTGTGGGACA 503595 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | ||||| | ||| ||||| || | || ||| |||| | | |||| ||| | Sbjct 503594 CCACGTGGTGCAGGTGGGATACCAGTAAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 503535 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | ||| ||||| || |||||| || ||| ||||||| || || Sbjct 503534 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAG 503475 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | |||||| || || ||||| || || | | |||| Sbjct 503474 GTGGAGAAGACCTCGGACTTCTTGGTTGGAATGGTGGTGTTTCTTGGGATGAGCTTGGTC 503415 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA-- 6986 || |||||| ||| |||| || || |||| || | || || | ||| | | Sbjct 503414 ATTTGACCACCAGCAGTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATC 503355 Query 6987 --------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || |||| | ||| || || || | | |||||||| ||||| | Sbjct 503354 TCGTTGGTGGACTTGGA-AGA--GGT----GTCTCCGGAGAGAATGGCGGCCTGGACGGC 503302 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || |||||||| || |||||||| ||||| || | || || | || || ||||| || Sbjct 503301 AGCACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTGCCGTTGAA 503242 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 ||||| | | | | ||| ||| | ||||| || || || || ||||| | ||||| Sbjct 503241 GTAATCGGTAATGAGCTTTTGGATTCTTGGGATACGAGTGGAACCTCCGACGAGGACGAT 503182 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || | || || ||||| || ||||| | ||| || ||||| || | Sbjct 503181 CTCGTGAACCTTGGATTTGTCAATCTTGGCATCTGCGAGGACACGGTCGACTGGGGTGGT 503122 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 |||||| | |||| || || ||||| || | |||||||| ||||| || || Sbjct 503121 GGTAGAACGGAAGAGGTCCTGGCAGAGCTCCTCGAATCTAGCACGGGTGATGGAGGTGTA 503062 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 || || | || ||| | | || || ||||| |||| |||||||| | || || | Sbjct 503061 AAAGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGAGGTTTGTGCAGAGGAGGAAAG 503002 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 |||||||| || ||||| || || || || | |||||| || ||||| | ||| ||| Sbjct 503001 GGTTCGCTTAGCTCGCTCGCAGGCGGTGCGGAGACGACGGAGAGCACGAGCGTTGGAGGA 502942 Query 7399 AA 7400 || Sbjct 502941 AA 502940 >seq444 Length=801281 Score = 167 bits (184), Expect = 3e-36 Identities = 350/516 (68%), Gaps = 17/516 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| ||||||||||| | | ||| || | || ||| | || |||||| Sbjct 654488 TCCTCGAAACGAGCACGGGTAATTTGAGCGTTGAAGTCCTCTCCATCGAACAAAGAATCA 654429 Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 || |||| || ||||| || ||| | | | | |||| ||| || ||||| || || | Sbjct 654428 ATCTCAACAGTGGTTTGGGCACCGTTGGAAAGA--GTTCTCTTAGCACGCTCGCAAGCAG 654371 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 | || | ||| ||||| ||||| | | |||||| | ||| ||||| || | | | | Sbjct 654370 TACGAAGACGTCGAAGAGCACGGGCATCACCGGACAAATCCTTCTTGGTCTTTCTTGTGA 654311 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 | || | |||||| |||| ||| | | ||||||||||| || ||||| || ||| Sbjct 654310 ATTCCTTCTTGAAGTGATCGAGCAAGT-TGGTATCGAAATCTTGGCCTCCCAAATGGGTA 654252 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || || ||||| || | ||| || | ||||| | | || ||||| Sbjct 654251 TCACCAGCTGTGGCCTTGACGGTGAAAACACCACCCTGGATGTTGAGAAGGGAGACATCG 654192 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTT--- 7599 || || || ||||| || || | || | || || ||| || | ||| ||| Sbjct 654191 AAAGTTCCTCCACCGAGATCGTAGATCAAGACATT----TCGCTCCTTGTTGGACTTTCC 654136 Query 7600 ---ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 | |||||||||| |||||||| || || ||||| || || || || || ||| ||| Sbjct 654135 GGCACCGAGACCGTATGCGATAGCAGCGGCAGTTGGCTCGTTGATGATTCGGAGAACGTT 654076 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || || ||||| | | ||||| || || ||||| || || |||||| |||||||| Sbjct 654075 AAGACCGGCAATGGCACCTGCATCCTTGGTGGCTTGACGCTGATTATCGTTGAAGTAGGC 654016 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| || | ||| || | | || ||||| || Sbjct 654015 TGGGACAGTGATGACTGCCTTGGCAACCTTCTTGCC 653980 >seq76 Length=131010 Score = 145 bits (160), Expect = 1e-29 Identities = 452/693 (65%), Gaps = 25/693 (4%) Strand=Plus/Plus Query 105284 ACTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCG 105343 |||| | ||| || || ||||| || || | || ||||| | | || ||||| Sbjct 91050 ACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGC 91109 Query 105344 ACTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATT 105403 |||| || || || || ||||||||||| | ||| |||| || ||| |||| | | Sbjct 91110 TCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCT 91169 Query 105404 TAATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGA----TACCTTCA 105459 || ||| | | ||||| || ||| | || | ||||| | || ||| Sbjct 91170 CAAGAATAGAGTACCAAAGCTTTTGGGCTTTGATG-CTCT---TGCGACCCTTGCCCTCA 91225 Query 105460 GATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTT 105519 || ||||||||||| || | |||| ||||| | |||||| || || | | ||| Sbjct 91226 GACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGA 91285 Query 105520 GCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAA 105579 || | ||| || | ||||| ||| | | |||||| || |||||||| | | Sbjct 91286 CACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGA 91345 Query 105580 TCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTC 105639 ||||||||||| | || ||||||| || || | |||| || | || || ||| Sbjct 91346 TCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 91405 Query 105640 AAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATA 105699 || | ||||| || |||| || ||||||||||||||| || | |||| || | | Sbjct 91406 TTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAA 91465 Query 105700 GACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACT 105753 | || | ||||| || |||||| |||||||| ||||| |||| | ||| Sbjct 91466 GCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACT 91522 Query 105754 CGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTT 105813 | | ||| |||| || || | ||| |||| || || || ||||| | | | Sbjct 91523 CTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTA 91582 Query 105814 GCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTT---ACTGATACGCGCA 105870 ||||| | |||||||| | || ||||| ||||| ||| | | ||| ||| Sbjct 91583 GCACGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTCTTTGAAATCATA---GCA 91639 Query 105871 CACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAA 105930 || || | ||| ||||||||||| || || || || ||||| | | |||||||| Sbjct 91640 CAAATCTTCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAG 91699 Query 105931 CACGATGACATTTGTGGTCTG-GGTGTACCAGC 105962 || ||||| | |||| | ||| ||||||||||| Sbjct 91700 CAGGATGAAAGTTGT-GCCTGTGGTGTACCAGC 91731 >seq4 Length=230096 Score = 86.0 bits (94), Expect = 8e-12 Identities = 194/283 (69%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || |||||||||||||| ||||| || ||| | ||||| || || | || Sbjct 42289 ATCGAAGTCCTCACCACCCAAGTGAGTATCTCCGTTGGTGGACTTGACCTCGAACACAC- 42231 Query 7516 TCCTTCAATGT-TTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 ||||| | | || ||| || | ||| || || || ||||||| || | || | Sbjct 42230 -CCTTCTGGATCTCAAGAACGGAGATATCGAAGGTTCCTCCACCCAAATCGTA---GACT 42175 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | ||| | ||| | | ||| || || ||||| || | || || || ||||| Sbjct 42174 GCGAT--GATC-TTGTCCTCATCCTTCTCCAGTCCGTATGCAAGCGCAGCAGCAGTTGGC 42118 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 || |||| | | ||| ||| || || ||||| ||| | ||||| || || |||| Sbjct 42117 TCGTTAACCACTCTCAGAACGTTAAGACCGGCAAT--TTGACCAGCATCCTTGGTGGCTT 42060 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 | ||||| |||||||| ||||| || ||||| || || || || Sbjct 42059 GACGTTGTGAATCGTTGAAGTATGCTGGGACTGTGACAACGGC 42017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128600184360