Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq76 253 3e-62 seq101 102 1e-16 seq79 86.0 8e-12 seq34 82.4 9e-11 >seq76 Length=131010 Score = 253 bits (280), Expect = 3e-62 Identities = 1139/1771 (64%), Gaps = 79/1771 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| | ||||| || ||| | || || || || || ||||| || ||| Sbjct 91854 CCACAACATATGATTATGCGTGTTGCGGTGGGAATACACGGTGAGGATATCGAGGCTGCC 91795 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||||| | |||| |||||| | || ||||| ||| Sbjct 91794 ATCGAGACCTACAACTTGATGTCCAGCAAATACTTCACCCACGCCTCCCCCACCCTTTTC 91735 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 |||||||||||| | ||| | || || ||||| || | | |||||||| Sbjct 91734 GCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTGATCGACATGAAGGAGGAC 91675 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTCAAAGTGGGC 111847 || |||| ||||||| ||| | |||| ||||| || |||||| || Sbjct 91674 AGCATTGATGGTATTTACGACAC----ATTGAAGATTTGTGCTATGATTTCAAAGAACGC 91619 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTA 111906 |||||||||||| | || | || || | || | | || || |||| |||| Sbjct 91618 TGGTGGTATCGGTCTCAACGTTCACAGAATCCGTGCTA-CTGGTGCTTATATTGCCGGTA 91560 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | || || | || | || || |||| ||||| | || |||||| ||| || | | Sbjct 91559 CCAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTTAACAACACCGCCAGAT 91500 Query 111967 ATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| | |||| ||| | |||| || || |||| |||| |||||||||| Sbjct 91499 ATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCAT 91443 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| ||| | | |||||||| || | || ||||| || | ||||||| | Sbjct 91442 GGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTTC 91383 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| |||||||| | ||||||||||||||||||||||||||||||| | ||||| Sbjct 91382 GTGCCCGTGATCTCTTTTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAA 91323 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGG 112200 ||| | | ||| | | | || || || || || ||| | |||||| | | Sbjct 91322 AGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTCTACG 91263 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CGACG 112259 |||| ||||| ||||| | || || |||||| || |||| | | || Sbjct 91262 GTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGA-----GGGCAAGGGTCGCAA 91208 Query 112260 GTGC----CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | || ||| | | ||| | ||||||| || ||||||| ||||| || | Sbjct 91207 GAGCATCAAAGCCCAAAAGCTTTGGTACTCTATTCTTGAGGCTCAAACTGAGACCGGAAA 91148 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || | ||||||||||| || || || |||| |||||| || ||||||||| | ||| Sbjct 91147 CCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGGTAC 91088 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGATGAGACG 112433 ||| || |||||| | || || || || | || ||| | || ||||||| Sbjct 91087 CATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGA--GTACTGTGCACCAGATGAGGTC 91030 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG-AGACAAAGAC 112492 ||| || || | || || | |||||||| | ||||| || | || |||| || Sbjct 91029 GCTTGTTGCAATTTGGCGTCGCTTGCTCTCCCAACATATGTCGA-CGAGAAGACTGCCAC 90971 Query 112493 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | ||||| | || || ||||| || || |||| || ||| | |||| | Sbjct 90970 TTATGATTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAACAAGAT 90911 Query 112553 TATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCG 112609 ||| ||| || | ||||| || |||| || | || ||| | | ||| | Sbjct 90910 TATCGATGTCAACTACTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCACAG 90854 Query 112610 TCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGC 112666 || |||| ||||||||| |||||||| || |||| ||| | |||| ||| | | Sbjct 90853 ACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGTCTTC---C 90797 Query 112667 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGC 112726 ||||| || || || ||| | | || | || || ||||| || || ||||| Sbjct 90796 TTTTGAGTCTCCAGAGGCCAAGCACCTTAACATTCAAATTTTCGAGACCATTTACCACGC 90737 Query 112727 CGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 112783 ||| |||| | ||| |||||||||| || || ||||||||||||| || | | | Sbjct 90736 TGCT-TTGA--CTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATATGAGACATATCA 90680 Query 112784 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC- 112842 || || || || || | || | ||| |||| ||| ||||||| || | ||| | | Sbjct 90679 AGGCTCGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTGTCACACCTACCG 90621 Query 112843 TTCACTACGACTGGG-ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 || | || |||| ||| | ||| ||| ||| | | ||| | ||||||||| Sbjct 90620 ATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATCGCTCAACACGGTATCCGTAACAGT 90562 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATG 112960 | | | || || |||||||||||| ||| |||| |||||| | || || || Sbjct 90561 TTGCTCGTCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGAT-TCAACGAGTG 90503 Query 112961 CTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGA 113019 ||| || || || || | |||||||| ||| || | ||| || ||||| || Sbjct 90502 CTTCGAGCCATATACCTCCAACATCTACTCT-CGACGTGTCCTTGCTGGAGAATTCCAAG 90444 Query 113020 TTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATA 113076 |||||||| || |||| |||| ||| || || || || |||||| | | | Sbjct 90443 TTGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGATATGGGACTTTGGTCCGACAACA 90387 Query 113077 TGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCA 113132 ||||| | | ||| || ||| ||||| || || |||||| || | || ||| Sbjct 90386 TGAAGAACCGTATCATTGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATCCCA 90331 Query 113133 GATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTG 113190 | ||| || ||| | ||| || |||||||| | ||| | | | | || | Sbjct 90330 GCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TCGTCC 90273 Query 113191 ACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG 113250 | ||||| || || |||||| |||||||||||| |||| ||||| | |||| Sbjct 90272 AGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGA 90213 Query 113251 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCA 113310 | ||||| ||| ||| || | |||||| | | |||||| |||||||| Sbjct 90212 AGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTCA 90153 Query 113311 AAACGGGGATGTATTACCTCCGATCTAAGGC 113341 | || || ||||| || ||||| ||| ||| Sbjct 90152 AGACTGGAATGTACTATCTCCGTACTATGGC 90122 >seq101 Length=586485 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| | || || | || || || ||||||||||||||||||| ||| || | Sbjct 137961 CCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTT 138020 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | | || | ||| | |||||||| || |||||| | ||||| ||||||||||| Sbjct 138021 TCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACG 138080 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || | ||||| ||||||||||| || ||| Sbjct 138081 AGTTGATCTCCCGTGACGAGGGTCTGCAC 138109 >seq79 Length=601583 Score = 86.0 bits (94), Expect = 8e-12 Identities = 217/326 (67%), Gaps = 18/326 (6%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 |||||||||||||| ||||||| ||| || | ||| || || || || || | | Sbjct 306364 AAACCATCCATCTCAGTCAAAATCTGATTGAGAGTAGCCTCTCGCTCGTCGTTTCCACCA 306305 Query 16033 GCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 || | | ||||| | | | ||| || | || || || ||||||||||||| Sbjct 306304 CCAAATGAACCAGCCTTTCCACGAGCCTTCCCAATTGCGTCGATTTCATCAATGAAGATA 306245 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 || || || ||| | | || | |||||||||| || || | || || ||| Sbjct 306244 ATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGATCTCGAACTCTGGAAGCACCAACA 306185 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTA 16202 ||||||||||| |||||||| | ||||| || || || ||| || ||| Sbjct 306184 CCAACAAACATTTCCACAAACT------CGGAACCACTGACACTGAAGAAAGGTACACCT 306131 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 ||||| || ||| ||||| ||| || | ||||||||| ||||| || ||| | ||| Sbjct 306130 GATTCTCCGGCAGTGGCTTTGGCTAGTAAAGTCTTACCAGTACCAGGTGGACCAGAGAGA 306071 Query 16263 AGGGCACCTCGTGGAATCTTGGCGCC 16288 | || ||||| || ||||| || || Sbjct 306070 ATAGCTCCTCGAGGGATCTTAGCACC 306045 >seq34 Length=176468 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 163600 TGGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCA 163659 ||| || ||||| |||||| |||||||| || ||||||||||| | ||||| ||||| Sbjct 143208 TGGCGCAGGTGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTTAATCA 143149 Query 163660 TGGAGACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTT-GAGA 163718 || || ||||| || ||||| ||| ||| || || | || ||| ||| |||| |||| Sbjct 143148 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAA-TTGGTCTTGGAGA 143090 Query 163719 GGTGTGAGACACCCGATGT 163737 | | |||||||| || Sbjct 143089 GAATCTACACACCCGAGGT 143071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738295340880