Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq76 168 8e-37 seq108 87.8 2e-12 >seq76 Length=131010 Score = 168 bits (186), Expect = 8e-37 Identities = 1111/1758 (63%), Gaps = 75/1758 (4%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 |||||| || ||||| ||||| |||||| |||||| || || ||||| | ||||| | Sbjct 90223 GTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGATGGT 90282 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || | | | || ||||| || |||||||| | | |||||||||| | || |||| Sbjct 90283 ACGTTGTGAG---ATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTT 90339 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCA-TGAGA---TCCTTCATCTCTTTCG 109672 | ||||| || || |||||| ||| || ||| | | |||||| | | | Sbjct 90340 TGGAACATTTTGGATTGATCCACCA----TCAGCAATGATACGGTTCTTCATGTTGTCGG 90395 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTC 109730 |||| || || | | |||||| | | ||| ||| |||||| || ||||| Sbjct 90396 ACCAAAGTCCCATATCGACGAGATCCTTGAGAAGCCATGG--GTTGACAACTTGGAATTC 90453 Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790 |||||||| ||||| ||||||||| | || || || ||||| ||||| ||| Sbjct 90454 TCCAGCAAGGACACGTCGAGAGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAA 90513 Query 109791 GCCTAGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCG 109847 || || ||||| | ||| | ||||| ||||| ||||| | ||| | |||||| || Sbjct 90514 TCCAAGAATTTG---ACTGGTACTGGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACG 90570 Query 109848 GAGACCCTT-----CG-TCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACT 109901 || ||| | || ||| | | ||| || | || |||||| || || | | Sbjct 90571 GATACCGTGTTGAGCGATCTGTTGCT--TCAAGC-TAGC---CCAATCCCAAAGATCGGT 90624 Query 109902 AAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACC 109961 | | || |||| |||||| || ||| || | |||| || ||||| || || Sbjct 90625 AGGT---GTGACACC---CCACATGTCATATTGGAGCTCGCCCTTAGAGGCAGGCGAGCC 90678 Query 109962 CTTGAAAC-TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCG 110020 |||| | |||| || | || | || || |||||||| ||||| | || | Sbjct 90679 -TTGATATGTCTCATATGGACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAG 90737 Query 110021 CATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGG 110080 | || || || ||||| ||||| ||| || | | | | |||| | | || || | Sbjct 90738 CGTGGTAAATGGTCTCGAAAATTTGAATGTTAAGGTGCTTGGCCTCTGGAGACTCAAAAG 90797 Query 110081 GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGAT 110140 |||||| | | | || |||| || ||||| |||||||||||| |||| || | | Sbjct 90798 GAAGACGAAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGT 90857 Query 110141 GCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGAT 110200 | | || || || || ||||| ||||| ||||| | | | Sbjct 90858 GACGGAAATTGCTCTTTCTTGCCTCAGGAACTGGGTAGTAGTTGACATCGATAATCTTGT 90917 Query 110201 TGAGATTCTTCGTCACAGTCTTCGT-GATTTCATGGAGTTTGTCGTAATCGAACGTTTTC 110259 | | ||||| ||| ||| | || || || || || | | |||| | || Sbjct 90918 TCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAGCTTCTGGAAATCATAAGTGGCA 90976 Query 110260 GTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCG 110319 |||| || | ||||||| | |||||||||| ||||| | |||||| || ||| Sbjct 90977 GTCTTCTCGTCGACATATGTTGGGAGAGCAAGCGACGCCAAATTGCAACAAGCGACCTCA 91036 Query 110320 TCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAG 110379 ||| | ||| || | ||| || || ||||||||||| || ||| ||| | Sbjct 91037 TCTGGTGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGA 91096 Query 110380 TTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||||| || || | ||| | |||||| |||||||| || |||||| | ||| | || || Sbjct 91097 TTCTTTTGGTTGCTCTTTCG-GTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGT 91155 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGC 110498 || || || | || ||||| | | ||| | | ||| || ||| | || Sbjct 91156 CTCAGTTTGAGCCTCAAGAATAGAGTACCAAAGCTTTTGGGCTTTGA----TGCTCTTGC 91211 Query 110499 GAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA 110553 || |||| |||| |||||| || ||||| | || || || | ||||| ||| Sbjct 91212 GAC-CCTTGCCCTCAGACTCGTATTTCTCATACAACGCTTCGAACTCGTCACCGTAGACA 91270 Query 110554 TCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACC 110613 || | | ||| || || || || | | | ||| | || ||||| Sbjct 91271 TCGGCCAAACCAGGACACTCGTTAGGGCACATCAATGTCCAGTCGAGGTTCTTTTCAACA 91330 Query 110614 CTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCT 110673 | ||||||||| || || |||||||| | || | || || |||||| |||| |||| Sbjct 91331 CGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGAACCTCC 91390 Query 110674 TCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCG 110733 || | || ||||| || || || | || || | | ||| | ||||||||| || Sbjct 91391 TCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCA 91450 Query 110734 AGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCT 110787 || |||| |||| | || | |||| ||| | || | |||||| | || Sbjct 91451 AGGTAGATGGCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTGGCG 91507 Query 110788 GTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTA 110847 ||| || || || ||||||||||||| ||||| | ||| | || || ||||| | Sbjct 91508 GTGTTGTTAAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCGGCA 91567 Query 110848 AT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 || | | || | | ||||| || ||| | | | ||| |||||||| || ||| Sbjct 91568 ATATAAGCAC-CAGTAGCACGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTCTT 91626 Query 110907 ACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 ||| |||| | ||| | | ||| | |||||||||||||| || |||| Sbjct 91627 TGAAATCATAGCACAAATCT-TCAATGTGTCGTAAATACCATCAATGCTGTCCTCCTTCA 91685 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 || | || || ||||| || || | || | | || || || || ||| || || | Sbjct 91686 TGTCGATCAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAAAGGGTGG 91745 Query 111026 GTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGG 111083 | | || || ||| || ||| ||||||| |||||| || |||| || | Sbjct 91746 GGGAGGCGTGGGTGA--AGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTC 91803 Query 111084 TACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGAT 111143 | ||| | |||||| || || | ||||| ||||| | ||||| ||| || ||| Sbjct 91804 GATATCCTCACCGTGTATTCCCACCGCAACACGCATAATCATATGTTGTGGACGCTCGCA 91863 Query 111144 TAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCC 111203 | ||| ||||| | ||| | || || ||| |||||||||| ||| |||||| Sbjct 91864 GATCTTGCCATCGAGACGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTG 91923 Query 111204 AAAATCGAAATCACGATC 111221 | | ||||||||| || Sbjct 91924 GTAGTTGAAATCACGGTC 91941 >seq108 Length=104828 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 |||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 96793 TCTTATGGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCCACGGTTCGAGCC 96852 Query 136772 C 136772 | Sbjct 96853 C 96853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972105396200