Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq76 297 2e-75 seq101 122 1e-22 seq79 105 8e-18 seq34 82.4 9e-11 >seq76 Length=131010 Score = 297 bits (328), Expect = 2e-75 Identities = 1178/1822 (65%), Gaps = 49/1822 (3%) Strand=Plus/Plus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTAC-ATATG 105639 ||| ||| |||||||||||||| || |||||||| || ||||| || | | | ||| Sbjct 90122 GCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCCAACTTCCA-GCCTGCGAAATG 90180 Query 105640 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTG 105699 |||| | || ||| ||| ||||| | |||| | ||||| |||| || Sbjct 90181 CATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTG 90240 Query 105700 GTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCC 105757 |||||||| |||||| | || ||||| | | || | | | | ||| | ||| Sbjct 90241 ATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA--TGGTACGTTGTGAGATCTCC 90298 Query 105758 CACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAA 105817 || || || ||| ||| |||||||||| ||||||| | || | |||||| ||||| Sbjct 90299 CAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGGATGTTTGGAACATTTTGGATTGAT 90358 Query 105818 CCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGA 105877 || || | | || | | |||||| | | ||||||||| || || | |||| Sbjct 90359 CCACCATCAGCAATGATACGGTTCTTCATGTTGTCGGACCAAAGTCCCATATCGACGAGA 90418 Query 105878 TCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA- 105934 || |||| || ||| |||||||| || ||||| || ||| | || ||| Sbjct 90419 TCCTTGAGAAGCCATGG--GTTGACAACTTGGAATTCTCCAGCAAGGACACGTCG-AGAG 90475 Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGA 105993 |||||||| | || || || || ||||| || || | |||||| |||| ||| Sbjct 90476 TAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGA-ATCCAAGAATTTGACTGGTACT 90534 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC 106053 |||||||||||| || || | | | ||||||||| | ||| | || ||| ||| Sbjct 90535 GGCTGTTGGCATAGGAGCGACGAGCAAACTGTTACGGATACCGTGTTGAGCGATCTGTTG 90594 Query 106054 CTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGA 106111 ||| | | |||| || | || | | ||| | || ||||||| ||| |||| Sbjct 90595 CTTCAAGCTAGCCCAATCCCAAA-GATCGGTAGGTGTGACAC-CCCACATGTCATATTGG 90652 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 ||| | || | || | || || || | | |||||||||| | ||| || | ||| Sbjct 90653 AGCTCGCCCTTAGAGGCAGGCGAGCCTTGATATGTCTCATATGGACCATGAATCTTTGCC 90712 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 || || | || || | ||||| || ||||| || || || || || | Sbjct 90713 AACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTCTCGAAAATTTGAATGTTAAGG 90772 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACC 106290 | |||||| || || ||||| | | || | | | | || |||| || ||||| Sbjct 90773 TGCTTGGCCTCTGGAGACTCAAAAG-GAAGACGAAGAGCCAAGAAGGCATCAGCAAGACC 90831 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 106347 ||||||||| | | ||||||||||||| || | ||| ||||| || |||| || Sbjct 90832 TTGAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAAC 90888 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTT 106406 || || | || || || | ||| | || ||| |||| ||| | || | Sbjct 90889 TGGGTAGTAGTTGACATCGATAATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGACCT 90947 Query 106407 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 106466 | ||||| || | ||||| ||||| ||||| || | |||||| |||| || || | Sbjct 90948 CGTGAAGCTTCTGGAAATCATAAGTGGCAGTCTTCTCGTCGACATATGTTGGGAGAGCAA 91007 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 || |||||||||||| ||| |||||| | |||||| | ||| || || | Sbjct 91008 GCGACGCCAAATTGCAACAAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTGC 91067 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 |||||||||| || || || || | |||||||||||| |||||| |||||| |||| Sbjct 91068 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCAT 91127 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 ||||||| |||||| | || | || ||||| || || | || ||||| | | ||| | Sbjct 91128 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTTTGAGCCTCAAGAATAGAGTACCAAA 91187 Query 106647 CATCGGCGGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGA 106703 | ||| || | | | || | ||| | ||||| | |||||| || || | Sbjct 91188 GCTTTTGGGCTTTGATGCTCTTGC---GACCCTTGCCCTCAGACTCGTATTTCTCATACA 91244 Query 106704 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 106763 ||||| ||||| ||||| | |||| | ||| || || || || || | | Sbjct 91245 ACGCTTCGAACTCGTCACCGTAGACATCGGCCAAACCAGGACACTCGTTAGGGCACATCA 91304 Query 106764 GAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATG 106823 | ||| | || ||||| ||||||||||| || ||||||||||| || | Sbjct 91305 ATGTCCAGTCGAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGT 91364 Query 106824 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 106883 |||||||||| | ||| |||| || | || ||||| ||| | || ||||||| Sbjct 91365 AAAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACT 91424 Query 106884 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC---- 106939 | | | ||| ||||||||||||||||| |||| |||| || || ||||| Sbjct 91425 CGAAAACATCGGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGT 91481 Query 106940 --CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997 ||| |||||| ||||| | || ||| |||||| || | ||||| |||| || | Sbjct 91482 TACCACCTTGATCAACATATCTGGCGGTGTTGTTAAAAACTCTGAGCATAGGAACGATTC 91541 Query 106998 CATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGT 107057 | | || | || || || || |||| || | | || | | || | || Sbjct 91542 CGTTGGAGTTTCCGTTGGTACCGGCAATATAAGCACCAGTAGCACGGATTCTGTGAACGT 91601 Query 107058 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 107117 | || ||||| ||||| |||||| || ||||| | | | || | || | Sbjct 91602 TGAGACCGATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAATGTGTCGTAAA 91661 Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 |||| | || ||||||||| || |||| |||||||| || | || | || Sbjct 91662 TACCATCAATGCTGTCCTCCTTCATGTCGATCAGGAAGCAGGATGAAAGTTGTGCCTGTG 91721 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTT 107235 |||||||||| ||| ||||| || | ||||| |||| || ||| ||||||| Sbjct 91722 GTGTACCAGCTGCGAAAAGGGTGGGGGAGGCGTGGGTGAA-GTA-TTTGCTGGACATCAA 91779 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || ||| ||||| | | ||| || || || || ||||| || || | || |||||||| Sbjct 91780 GTTGTAGGTCTCGATGGCAGCCTCGATATCCTCACCGTGTATTCCCACCGCAACACGCAT 91839 Query 107296 AAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCT 107354 || ||| | ||| || || || |||||||||| || | ||||| | || || Sbjct 91840 AATCATATGTTGTGGACGCTCGCAGATCTTGCCATCGAGACGGAGGAGATATGATC-GCT 91898 Query 107355 CAAGGGTTTTGAGACCAAAGTA 107376 | ||||| |||| ||| ||||| Sbjct 91899 CGAGGGTCTTGAAACCGAAGTA 91920 >seq101 Length=586485 Score = 122 bits (134), Expect = 1e-22 Identities = 334/506 (66%), Gaps = 12/506 (2%) Strand=Plus/Minus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 || ||||| ||||||||||||||||| || |||| ||||| ||||||||||| ||| Sbjct 138399 ACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCCATAAAGTCGAAT 138340 Query 117055 GGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGACAC 117113 || || | | || ||| | || || | |||||||||||| | || Sbjct 138339 GGGTTGGTAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAGACGATCAGCGAC 138281 Query 117114 ATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGTGC 117173 |||||||||| | |||| | | |||||| |||| ||| ||| || || || Sbjct 138280 GAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAGCACAAGGAAGAGC 138221 Query 117174 GTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTC 117233 || | |||| ||| |||||||||||| ||||| | | || ||| |||| | | | Sbjct 138220 CTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCTGC 138161 Query 117234 GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTGGA 117289 | | || | || ||| |||||| | |||| || || ||| | Sbjct 138160 CTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAG----AAGGCATGCGAAGTCAGTGTGCA 138105 Query 117290 GACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCT 117349 ||||||| || ||||| || | || || |||||| || || | |||||| || |||| Sbjct 138104 GACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGCT 138045 Query 117350 TCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 117409 |||||||||| | || | | ||| || || ||||||||||||||| ||| || | Sbjct 138044 TCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCGGCGA 137985 Query 117410 ACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCCAT 117468 | |||| ||| || | ||| |||| | || | |||| | | |||| | ||||| Sbjct 137984 AGGCAACAAGACGTTGGGCAAAGGTG-GACTCCTTGTCTTGGATCCATCGGACAGCCCAG 137926 Query 117469 TTCGCCTTCTTCTCAATACATGGTAC 117494 | |||||||||| || || || || Sbjct 137925 TCGGCCTTCTTCTTGATGCAAGGAAC 137900 >seq79 Length=601583 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 || || || ||||||||||||| |||||| || ||| | | ||| || |||||||| Sbjct 306268 GCGTCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCATAGCAAAGAGA 306209 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CA 9490 || ||||| || || || |||||||||||||| |||||||| | ||||| || Sbjct 306208 TCTCGAACTCTGGAAGCACCAACACCAACAAACATTTCCACAAACT------CGGAACCA 306155 Query 9491 TTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 || || ||| || ||| ||||| || ||| ||||| ||| || | ||||||| Sbjct 306154 CTGACACTGAAGAAAGGTACACCTGATTCTCCGGCAGTGGCTTTGGCTAGTAAAGTCTTA 306095 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 || ||||| || ||| | ||| | || || || || ||||| || || Sbjct 306094 CCAGTACCAGGTGGACCAGAGAGAATAGCTCCTCGAGGGATCTTAGCACC 306045 >seq34 Length=176468 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 155097 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 155156 ||| || ||||| |||||| ||||||| || ||||||||||| | ||||| ||||| Sbjct 143208 TGGCGCAGGTGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTTAATCA 143149 Query 155157 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214 ||| || ||||| || ||||| ||| | || ||||| | || ||| | ||| | ||| Sbjct 143148 CGGCGAGAAAGATTTCGAGGTCAAGGAGGGAGATCGTGTAGCTCAATTGGTCTTGGAG 143091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976898751960