Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq494 114 1e-20 >seq494 Length=318312 Score = 114 bits (126), Expect = 1e-20 Identities = 183/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930 || |||||||| ||||||||||| |||||| ||||| | | | | | | | | || Sbjct 246840 ATCATGATTACGTACCCATCTACCTTTGGTGTCTTTGAGCCCGAAGTCAAGGCTG-TCTG 246782 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 || | ||||| || |||| ||||| || || | ||||| || ||| | ||||| || Sbjct 246781 CGAGTTGGTTCACGAACATGGAGGTCAAGTTTACATGGATGGTGCGAATATGAATGCTCA 246722 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 | ||| | ||| ||||| ||| || |||||||||||||| || | || || Sbjct 246721 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTATGTCATCTCAATCTTCACAA 246662 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAA- 155109 ||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||| ||| Sbjct 246661 GACATTTTGTATTCCTCATGGTGGTGGTGGTCCAGGAGTTGGTCCAATTGGTGT--CAAG 246604 Query 155110 -AACATCTCACACCATTT 155126 ||||| |||||||| Sbjct 246603 TCGCATCTTGCACCATTT 246586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579208969955360