Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq494 127 2e-24 >seq494 Length=318312 Score = 127 bits (140), Expect = 2e-24 Identities = 192/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || ||||| | |||| | ||||| ||||| ||||| | ||||| || ||||||||| Sbjct 248040 GATATTGCATTTGGTAATGCCCAAAGATTTGGCGTTCCTTTTGGATATGGTGGTCCTCAT 247981 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGA---ATTGTA 158538 ||||| |||||||| | ||||| || ||| | || || || || | |||| | Sbjct 247980 GCTGCTTTCTTTGCCGTTAGTGACAAATACAAGCGGAAAATTCCAGGACGCCTCATTGGA 247921 Query 158539 GGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 158598 | | || |||||| || | || || ||||| ||||| |||||| ||||| Sbjct 247920 GTT---TCCAAAGATAGACTTGGAGACAAGGCGATGAGATTGGCACTTCAGACTCGAGAG 247864 Query 158599 CAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCT 158658 || |||||| ||||||| || || ||||| || | ||||||||||| || |||| || Sbjct 247863 CAACATATCCGAAGAGAAAAGGCTACCAGCAATGTATGCACAGCACAGGCTTTGCTCGCA 247804 Query 158659 AATATGTCTGGGTTCTATGCAGCATATCATGG 158690 |||||| || |||||||| | ||||| || Sbjct 247803 AATATGAGTGCTTTCTATGCTGTCTATCACGG 247772 Score = 120 bits (132), Expect = 4e-22 Identities = 184/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605 || |||||||| || |||||||| |||||| ||||| | | ||| | | | | || Sbjct 246840 ATCATGATTACGTACCCATCTACCTTTGGTGTCTTTGAGCCCGAAGTCAAGGCTG-TCTG 246782 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 || | ||||| || |||| ||||| || || | |||||||| ||| | ||||| || Sbjct 246781 CGAGTTGGTTCACGAACATGGAGGTCAAGTTTACATGGATGGTGCGAATATGAATGCTCA 246722 Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725 | || | ||| |||| ||| || |||||||||||||| || | || || Sbjct 246721 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTATGTCATCTCAATCTTCACAA 246662 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAA- 159784 |||||| |||||||| ||||| ||||| ||||| || || ||||| |||||||| ||| Sbjct 246661 GACATTTTGTATTCCTCATGGTGGTGGTGGTCCAGGAGTTGGTCCAATTGGTGT--CAAG 246604 Query 159785 -AACATCTCACACCATTT 159801 ||||| |||||||| Sbjct 246603 TCGCATCTTGCACCATTT 246586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588047311511440