Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq400 145 2e-29 seq486 120 7e-22 >seq400 Length=416305 Score = 145 bits (160), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || |||||||| | ||||| | ||||| |||||||| Sbjct 399246 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCCTCGAGCTG 399187 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | |||||||| ||||||||||| || || ||||| || || || Sbjct 399186 CTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTT 399127 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| ||| ||||| |||||||| | ||||| || || Sbjct 399126 GGACTTGACGTTATCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGT 399067 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| | ||| ||||| || || || || || ||||| || | |||||| | Sbjct 399546 GAGTCGGAGAACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCG 399487 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || || |||||||| || |||||||| ||||||||||| || || ||||| || Sbjct 399486 GCCGTCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTC 399427 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| ||||| || ||||||||| || || || ||||| ||||| || ||||| Sbjct 399426 CTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCACCTCGAGGGT 399367 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTAC 195128 | ||||| || ||||| || || || Sbjct 399366 GATGGTCTTGCCGGTCAAGGTCTTGAC 399340 >seq486 Length=791322 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || |||||||| | |||||| | ||||| ||||| ||||| || |||||||| Sbjct 144944 TTTTGGATGTTGTAATCTGAAAGAGTGCGTCCATCCTCGAGTTGCTTTCCAGCGAAGATC 145003 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||||||||| || || ||||| || ||||| || || || |||||| || || Sbjct 145004 AAACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTATCG 145063 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||||||| || ||||| | |||| ||||| || || | || || ||||| Sbjct 145064 ATTGTGTCCGAAGACTCAACTTCCAATGTAATGGTCTTACCCGTAAGGGTCTTGACGAA 145122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474080141743