Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq400 87.8 1e-12 seq224 86.0 4e-12 >seq400 Length=416305 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| ||||| ||||| ||||||||||| | || | || || Sbjct 399537 AACCAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTC 399478 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || || ||||| ||||| | || | ||||||||||| Sbjct 399477 AAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTG 399418 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| ||||| | | ||||| | ||| | ||| || |||| ||| |||| Sbjct 399417 AATCTTCGACTTGAC----GTTGTCGATAGTATCCGATGACTCCACCTCGAGGGTGATGG 399362 Query 34948 TTTTTCCCGTGAGAGTCTTCACAA 34971 | || || || | ||||| |||| Sbjct 399361 TCTTGCCGGTCAAGGTCTTGACAA 399338 >seq224 Length=493007 Score = 86.0 bits (94), Expect = 4e-12 Identities = 124/173 (72%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| ||| | || | || || || || || ||||| || Sbjct 271552 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAG 271611 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| ||||| || || | || | ||||||||||| ||||| |||||| || Sbjct 271612 ATTAGGCGTTGTTGATCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGATTTGAC--AT 271669 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 ||||||| |||| | ||| || |||| ||| ||||| || ||||||| Sbjct 271670 --TATCGATCGTGTCACTCGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGA 271720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631507026312