Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-19 seq4 104 2e-16 >seq2 Length=651517 Score = 113 bits (124), Expect = 4e-19 Identities = 387/595 (65%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | |||||||| || ||||| ||| | | | ||| | | Sbjct 502143 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTATCGTGATGATCGA 502202 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||| ||||| ||||| || || || ||| |||| || || || | ||| | ||||| Sbjct 502203 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 502262 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACC 550168 || || || | | | | || ||||| ||||| | |||| ||| || || || || Sbjct 502263 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTTGCCA-TG--AACCCCGCC 502319 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCA 550227 || || | ||||| || || ||| | || ||| | ||||| | || | || || Sbjct 502320 AACACAGTCTTTGACGCAAAGCGTCTGATCGGACGCAAGTTCGCA-GACCAGGAAGTCCA 502378 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 ||| ||||||||||| | || ||| | | | | |||||| ||| | || Sbjct 502379 GGCTGATATGAAGCACTTTCCCTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGA 502438 Query 550288 AGCTACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | | |||| | || ||||| ||||||| |||| || || ||| | | Sbjct 502439 -GATTGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCT 502497 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || |||| | | || ||| || | ||||| | || | | || || Sbjct 502498 TGGTCAAGATGAGAGAGACTGCCGAGGCGTACCTTGGTGGAACCGTCAACAACGCCGTCG 502557 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || |||||||| |||| || |||||||||||||| || || || || || | Sbjct 502558 TGACCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTGA 502617 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | ||||| || || ||||| || || ||||| || ||||| ||||| || ||||||||| Sbjct 502618 TCGCTGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCATATG 502677 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 | || || || | ||| || | || || |||||||||||| ||| || Sbjct 502678 GTCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 502732 Score = 96.9 bits (106), Expect = 3e-14 Identities = 447/704 (63%), Gaps = 13/704 (2%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| |||||||| | || || ||||| |||| || ||| | ||||| || | | Sbjct 502957 GCTCTCCGTCGTCTCCGCACCGCCTGCGAGCGAGCTAAGCGAACCCTTTCCTCCTCTGCA 503016 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 |||||| | || ||| | || || | || ||||| || || | | | || | || | Sbjct 503017 CAAACCTCCATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTTTACACCTCCATCACC 503076 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | || | ||| || || | || || ||||| | || | ||||| || Sbjct 503077 CGTGCTAGATTCGAGGAGCTCTGCCAGGACCTCTTCCGTTCTACCACCACCCCAGTCGAC 503136 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | |||| | |||||||| |||||||| || || || || || || || || Sbjct 503137 CGTGTCCTCGCAGATGCCAAGATTGACAAATCCAAGGTTCACGAGATCGTCCTCGTCGGA 503196 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAA 552191 || || || | || || | ||| | ||| | | | | | ||| ||||| || || Sbjct 503197 GGTTCCACTCGTATCCCAAGAATCC---AAAAGCTCATTACCGATTACTTCAACGGCAAG 503253 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | ||| |||| | || || |||||||||||||| || ||||| || | || | Sbjct 503254 GAGCCAAAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGG 503311 Query 552250 CAGCTATTCTTTCTGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306 | || ||||| || ||| | | || | || | || || | || | || | |||| Sbjct 503312 CCGCCATTCTCTCCGGAGACACCTCTTCCAAGTCCACCAACGAGATCCTCCTCCTCGATG 503371 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | | || | || || ||| | || || | ||| ||| ||||| || || ||| | Sbjct 503372 TCGCGCCATTGTCCCTCGGTATCGAGACTGCTGGTGGTCAAATGACCAAGCTCATCCCAA 503431 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 |||| || || ||||| || || || || || || || | || || || ||| Sbjct 503432 GAAACACCACCATTCCAACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAAC 503491 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| ||| || ||| | || || || || | || ||| || || || || | Sbjct 503492 CTGGTGTGCTTATCCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTT 503551 Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 | |||| || | | ||||| || ||||| || ||||| || || ||||| || | Sbjct 503552 TGGGTAAATTCGAGCTTACTGGTATCCCACCTGCACCACGTGGTGTCCCACAAATCGAGG 503611 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 | || || ||| | |||||||| ||||| |||| || ||||| Sbjct 503612 TCACCTTTGATGTTGATGCCAACGGAATCATGAACGTCTCTGCT 503655 >seq4 Length=230096 Score = 104 bits (114), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || |||||||| || || || |||||||||||||| || || |||| Sbjct 42015 ATGCCGTTGTCACAGTCCCAGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATG 42074 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||| || ||||| ||||| | | | || || || ||||||||||| | Sbjct 42075 CTGGTCAAATTGCCGGTCTTAACGTTCTGAGAGTGGTTAACGAGCCAACTGCTGCTGCGC 42134 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551 ||||||| ||||| || || || | || ||||| Sbjct 42135 TTGCATACGGACTGGAGAAGGATGAGGA-CAAGA 42167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029268024094210