Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq400 125 6e-24 >seq400 Length=416305 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| ||||| || ||||| |||||||| |||| | |||| | |||| ||| Sbjct 399764 ACCAAATGAAGTGTAGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 399705 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| ||||| || || | |||||||| || || || || || || ||||| ||| Sbjct 399704 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 399645 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||| || || | ||||| || ||||||| || || Sbjct 399644 ATCTTCGACTTCACATTATCGATAGTATCCGATGACTCCACCTCGAGAGTGATGGTCTTC 399585 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || || ||||| Sbjct 399584 CCGGTGAGGGTCTTGACGAAGATTTGCAT 399556 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || ||||| || ||||||||| || || | |||| ||||||||||| || || || Sbjct 399974 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGACCATCCTCCAATTGCTTGCCGGCGAAA 399915 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 ||||| ||||||||||| || ||||| || || ||||| || || ||| || ||| | Sbjct 399914 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 399855 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | ||||| || | |||||||| | || | || ||||| || || || || ||| Sbjct 399854 TCAATTGTGTCTGAAGACTCCACTTCCAATGTAATAGTCTTGCCCGTCAAGGTCTTGACA 399795 Query 101459 AATATCTGCAT 101469 || |||||||| Sbjct 399794 AAGATCTGCAT 399784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396275845118853