Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq101 127 4e-24 >seq101 Length=586485 Score = 127 bits (140), Expect = 4e-24 Identities = 349/523 (67%), Gaps = 25/523 (5%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || | || | || ||||||||||| ||||| || | | |||||||||||| Sbjct 138411 TGGTAATCAGCGACACGCTTTTCAAAGAAGTTGGTCTTTCCGGCAAGAGAGATGTTCTCC 138352 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAG 47958 || ||| ||| ||||||| || || ||| | ||| ||| | || || Sbjct 138351 ATAAAGTCGAATGGGTTGGTAACCTTGTAAACCT-TCTCATTGCCGAGGGAAAGGAGGAG 138293 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| |||||| |||| ||||||| ||| | | || ||||||||| | || | Sbjct 138292 ACGATCAGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGAAGAG- 138234 Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || ||||| || | ||||| | ||| |||| || || || | | | Sbjct 138233 CACAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGA-CG 138175 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTG-TTGCGCAGGTGCTT------GGCATAGAGCATG 48130 || | ||||| | | ||| ||| || | ||||| || |||| | | Sbjct 138174 GCCT------GGACT--GCTGCCTTGCTTGGGC-GATGCTTCAAGTGGGAGAAGAGAAGG 138124 Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || || ||||| |||||| || ||||| ||| ||| | | ||||||||||| ||| Sbjct 138123 CATGCGAAGTCAGTGTGCAGACCCTCGTCACGGGAGATCAACTCGTTGGAGAAGGTAAGA 138064 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||| ||||| || | || || | |||||| || | |||||||||||| ||||||| Sbjct 138063 CCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAG 138004 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || ||||| || || | | | || | | | ||||||| | Sbjct 138003 ATACCCTCAACAGCGGCGAAGGCAACAAGACGTTGGGCAAAGGTGGACTCCTTGTCTTGG 137944 Query 48311 ATCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| ||| | |||||||| ||||||||||||||||| || Sbjct 137943 ATCCATCGGACA--GCCCAGTCGGCCTTCTTCTTGATGCAAGG 137903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526640239360