Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq101 107 4e-18 >seq101 Length=586485 Score = 107 bits (118), Expect = 4e-18 Identities = 331/513 (65%), Gaps = 11/513 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTT 25872 ||||||||| |||||| ||||| | |||||| | || || | | | || ||| Sbjct 137907 GCATCAAGAAGAAGGCCGACTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCCACCTTT 137965 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | | | || || || ||||| || ||||| ||||| ||||| ||||| || || || || Sbjct 137966 GCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCC 138025 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||| | ||| || || |||| | || || ||| ||||||||| | Sbjct 138026 TCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTG 138085 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | | ||||||||||| |||| || || || ||||| |||| | | ||||||| Sbjct 138086 ATCTCCCGTGACGAGGGTCTGCACACTGACTTCGCATGCCTTCTCTTCTC---CCACTTG 138142 Query 26053 CTCCACAAACCTTCTCAAGAGA-CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 || || |||| | | ||| | |||||| |||||||| ||||| || Sbjct 138143 AAGCA-TCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGA 138201 Query 26112 GAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCAT 26171 | | ||||| | ||||||||| || | || Sbjct 138202 GCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCAACTTGAT 138261 Query 26172 GAGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCAGCTGGGACTCGCCAGA 26229 || ||||||||||||| || || || | ||| || | || || || | | Sbjct 138262 GAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCC--CTCGGCAATGAGAAG 138319 Query 26230 CTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | |||| | ||||| |||||||||||||| ||||| || | | || |||||| Sbjct 138320 GTTTACAAGGTTACCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCCGGAAAGACC 138379 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||||||||||||||| | |||| || || ||| Sbjct 138380 AACTTCTTTGAAAAGCGTGTCGCTGATTACCAA 138412 Score = 102 bits (112), Expect = 2e-16 Identities = 179/260 (69%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || ||| |||||| ||||| ||||||||||| Sbjct 137514 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAGGAGATTGATCTA 137573 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| |||| || |||| | | | ||||||| | || || Sbjct 137574 TCCAAGGATCTCCACGACTGGAACAACAAGCTCAA--CGATGACGAGCGTTACTTCATCT 137631 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || |||||||| || || || ||||| || || |||| Sbjct 137632 CCCACGTCCTCGCTTTCTTCGCTGCCTCTGACGGAATTGTCAACGAAAACCTCCTCGAGC 137691 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| ||| ||||| || | |||||| | |||||||||||||| || | Sbjct 137692 GCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 137751 Query 25712 TCGAAAATGTGCACTCTGAG 25731 | || || | ||||||||| Sbjct 137752 TGGAGAACATCCACTCTGAG 137771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838658013760