Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2 102 5e-16 seq400 89.7 3e-12 seq4 87.8 1e-11 >seq2 Length=651517 Score = 102 bits (112), Expect = 5e-16 Identities = 384/596 (64%), Gaps = 10/596 (2%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || ||||| ||| | ||||| || ||| ||||| | | | | | ||| | Sbjct 502142 TGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTGGGTATCTATCGTGATGATCG 502201 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 | | || || || ||||| ||||| || || |||| || || || | ||| | || || Sbjct 502202 AATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCAC 502261 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | ||| || |||||||| || || | |||| ||| || || | || Sbjct 502262 AGATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTTGCCATGAACCCCGCCAA 502321 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAA 474565 || | ||||| || || | |||| || || || || | || ||| ||||| Sbjct 502322 CACAGTCTTTGACGCAAAGCGTCTGATCGGACGCAAGTTCGCAGA--CCAGGAAGTCCAG 502379 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623 |||||||| || | || || | || | | |||||| || || | || Sbjct 502380 GCTGATATGAAGCACTTTCCCTTCACCGTCCTCGACCGTGGTGGAAAGCCTGTCGTCGAG 502439 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | || | || || | || ||||| |||| || |||| ||||| ||| | | Sbjct 502440 ATTGAGTTCAAG--GGCGAGAAGAAGCAATTCACACCAGAGGAAATCTCTTCCATGATCT 502497 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | ||| |||| | | || || ||| | || ||||| | || | | || || Sbjct 502498 TGGTCAAGATGAGAGAGACTGCCGAGG-CGTACCTTGGTGGAACCGTCAACAACGCCGTC 502556 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || |||||||| |||| ||||| ||||||||||| || || || || || Sbjct 502557 GTGACCGTCCCAGCATACTTTACCGATTCACAACGTCAAGCCACCAAGGACGCCGGTTTG 502616 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || ||||| || ||| | || || || || || || || || ||||| |||| ||| Sbjct 502617 ATCGCTGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCATAT 502676 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||||| || ||||| ||| || ||| ||| | ||||||||| ||| || Sbjct 502677 GGTCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 502732 >seq400 Length=416305 Score = 89.7 bits (98), Expect = 3e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || | || ||||||| ||||| Sbjct 399264 ACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGAGT 399205 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || |||||||| ||||| || | |||||||||||| ||||||||||| Sbjct 399204 ACGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATTCC 399145 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| ||||| || || || || | | | | |||| Sbjct 399144 CTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATGGTGTCGGAAGACTCCA-CCTCAA 399086 Query 480730 GGGTAATAGTTTTACCGGTGA 480750 |||| ||||| |||||||||| Sbjct 399085 GGGTGATAGTCTTACCGGTGA 399065 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||||||||| |||||||| |||||||||||||| || || || || || |||||| Sbjct 399482 TCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTG 399423 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| ||||| || |||||||| | || | | || ||||| || Sbjct 399422 TCCTGAATCTTCGACTTGACGTTGTCGATAGTATCCGATGACTCCA-CCTCGAGGGTGAT 399364 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAA 480772 || || ||||| | ||||| || || | ||||| Sbjct 399363 GGTCTTGCCGGTCAAGGTCTTGAC--AACTGTGGAA 399330 >seq4 Length=230096 Score = 87.8 bits (96), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || |||||||| || || ||||| ||||||||||| || || |||| Sbjct 42015 ATGCCGTTGTCACAGTCCCAGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATG 42074 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| |||||||| ||| | | | |||| || ||||| || || || | Sbjct 42075 CTGGTCAAATTGCCGGTCTTAACGTTCTGAGAGTGGTTAACGAGCCAACTGCTGCTGCGC 42134 Query 474855 TTGCTTATGGTCTTGATAAGAATTCTGACAA 474885 |||| || || || || ||| || ||||| Sbjct 42135 TTGCATACGGACTGGAGAAGGATGAGGACAA 42165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268156508623292