Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq76 102 4e-17 >seq76 Length=131010 Score = 102 bits (112), Expect = 4e-17 Identities = 242/363 (67%), Gaps = 2/363 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || | |||||||||||| | || ||||| | ||| | || | Sbjct 91325 TCAACACGCTTCATGAAGAGATCTGGAATCCAGAGAGCGTAAAAGAGATCACGGGCACGA 91384 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | || || |||||||| |||||| || || | ||| || |||| ||| | ||||||| Sbjct 91385 ACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCAT 91444 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | ||||| || ||| ||| | || ||||||||||| || ||||| Sbjct 91445 GGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTG 91504 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 || || | || |||||| | | ||| ||||| | ||| | || |||||| || | Sbjct 91505 GCGGTGTTGTTAAAAACTCTGAGCATAGGAACGATTCCGTTGGAGTTTCCGTTGGTACCG 91564 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| | | || || | | || |||| | | | |||||| |||||||| Sbjct 91565 GCAATATAAGCACCAGTAGCACGGATTCTGTGAACGTTGAGACCGATACCACCAGCGTTC 91624 Query 26222 TTTGAAATAGCTGCAC-AATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 |||||||| |||| ||||| || ||| ||| |||| || | ||||| || | || Sbjct 91625 TTTGAAATCATAGCACAAATCTTCAA-TGTGTCGTAAATACCATCAATGCTGTCCTCCTT 91683 Query 26281 CAT 26283 ||| Sbjct 91684 CAT 91686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038368603675