Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq494 120 4e-22 >seq494 Length=318312 Score = 120 bits (132), Expect = 4e-22 Identities = 184/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTT--TTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCA 138218 |||||||| ||||| ||| |||||||| ||||| || || ||||| ||||| ||| Sbjct 246586 AAATGGTGCAAGATGCGACTTG--ACACCAATTGGACCAACTCCTGGACCACCACCACCA 246643 Query 138219 TGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACAT 138278 || |||||||| |||||||| || | ||| |||||||||||||| || ||| |||| Sbjct 246644 TGAGGAATACAAAATGTCTTGTGAAGATTGAGATGACATACATCAGCCCCAATCTCACCA 246703 Query 138279 GGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCA 138338 ||| | || | || ||||| | ||| |||||||| | || || ||||| ||| Sbjct 246704 GGTGAGCACAATCCAATTTGAGCATTCATATTCGCACCATCCATGTAAACTTGACCTCCA 246763 Query 138339 TTGTCATGAACGATCTTACATATCTGTC-TGATGTTTGTTTCAAATACACCATGAGTCGA 138397 | || ||||| | || || | | | | ||| | | ||||| |||||| || || Sbjct 246764 TGTTCGTGAACCAACTCGCAGA-CAGCCTTGACTTCGGGCTCAAAGACACCAAAGGTAGA 246822 Query 138398 TGGATATGTAATCATAAT 138415 ||| || |||||||| || Sbjct 246823 TGGGTACGTAATCATGAT 246840 Score = 118 bits (130), Expect = 1e-21 Identities = 193/277 (70%), Gaps = 16/277 (6%) Strand=Plus/Plus Query 139272 CCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATG 139331 || ||||| | |||||||| || |||||||||||||| || ||||||||||| | Sbjct 247772 CCGTGATAGACAGCATAGAAAGCACTCATATTTGCGAGCAAAGCCTGTGCTGTGCATACA 247831 Query 139332 TTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTAT 139391 || ||||| || || ||||||| ||||| ||||||| ||| || ||||| ||||| Sbjct 247832 TTGCTGGTAGCCTTTTCTCTTCGGATATGTTGCTCTCGAGTCTGAAGTGCCAATCT---- 247887 Query 139392 GCAGGATTGCCTTCGCT----GTCCA-CTGACTGACCTACAAT---TCTGCCAGGTATCT 139443 || ||||| || ||| | || | || |||| | || || || | Sbjct 247888 ----CATCGCCTTGTCTCCAAGTCTATCTTTGGAAACTCCAATGAGGCGTCCTGGAATTT 247943 Query 139444 TTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAG 139503 | | ||| || ||||| | |||||||| |||||||||||||| || ||||| | || Sbjct 247944 TCCGCTTGTATTTGTCACTAACGGCAAAGAAAGCAGCATGAGGACCACCATATCCAAAAG 248003 Query 139504 GAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 ||| ||||| ||||| | |||| | |||||||| Sbjct 248004 GAACGCCAAATCTTTGGGCATTACCAAATGCAATATC 248040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994571373080