Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycina_20herbarum_20[genbank_20GCA_5F001414485.1_202015-10-27] 529 sequences; 69,308,136 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq76 248 1e-60 seq79 123 3e-23 seq101 122 1e-22 seq34 82.4 9e-11 >seq76 Length=131010 Score = 248 bits (274), Expect = 1e-60 Identities = 1162/1814 (64%), Gaps = 51/1814 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| ||| |||| ||||| ||| || | ||||| | || |||||||||| || Sbjct 91920 TACTTCGGTTTCAAGACCCTCGAGC-GATCATATCTCCTCCGTCTCGATGGCAAGATCTG 91862 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || ||||| | ||| | ||||| || || | || || ||||| || || || || Sbjct 91861 CGAGCGTCCACAACATATGATTATGCGTGTTGCGGTGGGAATACACGGTGAGGATATCGA 91802 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| | | ||||| ||| || ||||||| ||| || |||| ||||| | || Sbjct 91801 GGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAA-TAC-TTCACCCACGCCTCCCCC 91744 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 ||||| ||| |||||||||||| | || | || |||||||| |||| || Sbjct 91743 ACCCTTTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTGATCGACATG 91684 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| || | ||||| || | || | | | ||||| || |||||| Sbjct 91683 AAGGAGGACAGCATTGATGGTATTTACGACACATTGAAGATTTGTGCTATGATTTCAAAG 91624 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||||| ||||| || | || | || | | || | | || |||| Sbjct 91623 AACGCTGGTGGTATCGGTCTCAACGTTCACAGAATCCGTGCTACTGGTGCTTATATTGCC 91564 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || || | || | || || |||| ||||| | || |||||| ||| || Sbjct 91563 GGTACCAACGGAAACTCCAACGGAATCGTTCCTATGCTCAGAGTTTTTAACAACACCGCC 91504 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCAT-CGCGGTCTACTTGGAA 75616 | ||||| |||||| || | |||| | || | | ||| ||||| | || Sbjct 91503 AGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAG 91447 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 |||||||| |||||| | | |||||||| || | ||| ||||| || | || ||| Sbjct 91446 CCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAG 91387 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | ||| | |||||||||| | || ||||||||||| || ||||||||||| ||| Sbjct 91386 GTTCGTGCCCGTGATCTCTTTTACGCTCTCTGGATTCCAGATCTCTTCATGAAGCGTGTT 91327 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 || || | ||| | | | || || || || || ||| | |||| | Sbjct 91326 GAAAAGAACCTCGACTGGACATTGATGTGCCCTAACGAGTGTCCTGGTTTGGCCGATGTC 91267 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA-GAGCCAATGC 75855 ||||| ||||| ||||| | || || || || ||||| | | | | || Sbjct 91266 TACGGTGACGAGTTCGAAGCGTTGTATGAGAAATACGAGTCTGAGGGCAAGGGTC---GC 91210 Query 75856 GACTGTACCA--GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 | | | || ||| | ||||| | ||||||| | | || || ||||| ||| Sbjct 91209 AAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATTCTTGAGGCTCAAACTGAGACCGGA 91150 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 | || | |||||||||||||||||||| ||| ||||| |||||||||||| | || Sbjct 91149 AACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTCGGT 91090 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 || ||| ||||| || | ||||| || ||| | |||||| | |||||| Sbjct 91089 ACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGAGTACTGTGCACCAGATGAGGTC 91030 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACT 76093 ||| |||||||||||| || | || || |||| |||||| | || ||||| |||| Sbjct 91029 GCTTGTTGCAATTTGGCGTCGCTTGCTCTCCCAACATATGTCGACGAGAAGACTGCCACT 90970 Query 76094 TTTGATTATGAAAAACTTCATGAAATC-ACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||||| | || ||||| || || | ||| |||| ||| || | ||| | Sbjct 90969 TATGATTTCCAGAAGCTTCACGAGGTCTGCCAAG-TTGTCGTCAAGAACTTGAACAAGAT 90911 Query 76153 CATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAG 76209 || || || | || || || |||| || ||||| ||| | || ||||| Sbjct 90910 TATCGATGTCAACTACTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTTCCGTCACAG 90854 Query 76210 ACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TATTTTGTGCCGCTACGCAT 76268 |||||||| | | |||||||||||||| || |||| || | | | | || | | | Sbjct 90853 ACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGTCTTC-CTT 90795 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 |||| || || |||||| | | || || || || || ||||| || ||||| Sbjct 90794 TTGAGTCTCCAGAGGCCAAGCACCTTAACATTCAAATTTTCGAGACCATTTACCACGCTG 90735 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | || || || ||||| | || ||| | |||||||||| | | || | Sbjct 90734 CTTTGACTGCTTCCATGGAGTTGGCAAAGATTCATGGTCCATATGAGACATATCAAGGCT 90675 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAA 76446 | || || || | || | ||| || | ||| ||||||| || | ||| | | || Sbjct 90674 CGCCTGCCTCTAAGGGCGAGCTCCAATATGACATGTGGG-GTGTCACACCTACCGATC-T 90617 Query 76447 CTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 76506 | || |||| | | ||| ||| ||| | | ||| | ||||||||| | | Sbjct 90616 TTGGGATTGGGCTAGCTTGAAGCAACAGATCGCTCAACACGGTATCCGTAACAGTTTGCT 90557 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGCTTTG 76565 | || || |||||||||||| ||| |||| |||||| | || || ||||| | Sbjct 90556 CGTCGCTCCTATGCCAACAGCCAGTACCAGTCAAATTCTTGGAT-TCAACGAGTGCTTCG 90498 Query 76566 AACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCA 76625 | ||||| || | ||||||||| || | ||| || || || || |||||| Sbjct 90497 AGCCATATACCTCCAACATCTACTCTCGACGTGTCCTTGCTGGAGAATTCCAAGTTGTCA 90438 Query 76626 ACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGA-- 76683 || || |||| || ||| | || || || |||||| | | |||||| | Sbjct 90437 ACCCATGGCTTCTCAAGGATCTCGTCGATATGGGACTTTGGTCCGACAACATGAAGAACC 90378 Query 76684 -TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATC 76741 | ||| || ||| ||||| || || |||||| | || | ||||||| ||||||| Sbjct 90377 GTATCATTGCTGA----TGGTGGATCAATCCAAAATGTTCCAAACATCCCAGCTGATATC 90322 Query 76742 AAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCG 76799 ||| ||| ||| || || ||||| | ||| | | | | || | | ||||| | Sbjct 90321 AAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TCGTCCAGATGGCTG 90264 Query 76800 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAA 76859 | || |||||| |||||||||||| |||| ||||| | |||| | |||| Sbjct 90263 CCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGACCCAA 90204 Query 76860 CGATGTCCAAGCTCTCTTCTATGCATAT-GTACGCGTGGAAACAGGGGCTCAAAACCGGA 76918 | ||| ||| || | ||||||| | | | || ||||| ||| ||||| || ||| Sbjct 90203 CCATGGGTAAGATCACCAGTATGCATTTCGCAGGC-TGGAAGTTGGGTCTCAAGACTGGA 90145 Query 76919 ATGTACTATCTCCG 76932 |||||||||||||| Sbjct 90144 ATGTACTATCTCCG 90131 >seq79 Length=601583 Score = 123 bits (136), Expect = 3e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| |||||||| ||||| || ||||| | ||| || ||||| || ||||| | Sbjct 306045 GGTGCTAAGATCCCTCGAGGAGCTATTCTCTCTGGTCCACCTGGTACTGGTAAGACTTTA 306104 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 || ||| ||||| || || |||||| ||| || ||| || |||| | || | | Sbjct 306105 CTAGCCAAAGCCACTGCCGGAGAATCAGGTGTACCTTTCTTC-AGTGTCAGTGGTTCCGA 306163 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 |||||||| |||||||||||||| ||||| || ||||| |||||||||| || || Sbjct 306164 GTTTGTGGAAATGTTTGTTGGTGTTGGTGCTTCCAGAGTTCGAGATCTCTTTGCTATGGC 306223 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 | | | ||| || |||||| ||||||||||||| || || || Sbjct 306224 CAGAAAGAATACCCCTTGTATTATCTTCATTGATGAAATCGACGC 306268 >seq101 Length=586485 Score = 122 bits (134), Expect = 1e-22 Identities = 334/506 (66%), Gaps = 12/506 (2%) Strand=Plus/Plus Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCG 65066 || || || || |||||||||| | ||||| | |||| | | |||| | || Sbjct 137900 GTTCCTTGCATCAAGAAGAAGGCCGACTGGGCTGTCCGATGGATCCAAGACAAGGAGTC- 137958 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 | |||| ||| | || ||| |||| || || ||| ||||||||||||||| || || Sbjct 137959 CACCTTTGCCCAACGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGTGGCTC 138018 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||| | | || | |||||||||||||| || |||||| | || || |||||| || Sbjct 138019 TTTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAA 138078 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTT----TGCCGTGGAGCTCTTCA 65242 || | || ||||| || |||||||| ||| || || |||| | |||||| Sbjct 138079 CGAGTTGATCTCCCGTGACGAGGGTCTGCACACTGACTTCGCATGCCTT----CTCTTCT 138134 Query 65243 AGACTTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTG 65302 ||| || | || | | | | | |||| ||| || | | ||||| |||| Sbjct 138135 CCCACTTGAAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTG 138194 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTG 65362 |||||||| ||| |||| | || || || || ||| ||| |||| |||||| | Sbjct 138195 AGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGTGCTCTTCTCGGCATGAACGCCA 138254 Query 65363 AGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTG 65421 | |||| | |||||||||| || | |||||||||||| | || || Sbjct 138255 ACTTGATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTCCTTTCCCTCGGCAATG 138314 Query 65422 CCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 | ||| || | | || ||||| ||||||||||| ||||| |||| || Sbjct 138315 AGA-AGGTTTACAAGGTTACCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCCGGA 138373 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGT 65507 ||||||||||||||||| ||||| || Sbjct 138374 AAGACCAACTTCTTTGAAAAGCGTGT 138399 >seq34 Length=176468 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 27861 CTCAAGGACAAGTTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTG 27920 ||| | ||| | ||| || | ||||| || | ||| ||||| || ||||| || ||||| Sbjct 143091 CTCCAAGACCAATTGAGCTACACGATCTCCCTCCTTGACCTCGAAATCTTTCTCGCCGTG 143150 Query 27921 ATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCA 27978 ||| ||||| | ||||||||||| || ||||||| |||||| ||||| || ||| Sbjct 143151 ATTAAAGAGGAGGACTTTGACTTGGCCACGGTAGTCGGCATCAATTACACCTGCGCCA 143208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565655183520